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FB2025_01
,
released February 20, 2025
Tools
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Pseudobase
RGD
SGD
TAIR
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FlyORF
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Kyoto Stock Center
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Vienna Drosophila Resource Center (VDRC)
BDGP
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FB2025_01
,
released February 20, 2025
Project: modENCODE_chromatin_histones_cells
J2G
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General Information
Name
modENCODE_chromatin_histones_cells
Species
D. melanogaster
Project type
genome binding
FlyBase ID
FBlc0003369
Parent Project
modENCODE_chromatin
Data Provider
Title
Genome-wide localization of histones and their modifications in cell lines by ChIP-chip and ChIP-Seq.
Accessions
Overview
Description
Project attributes
Biosample type
immortalized cell line
(
modENCODE Data Coordination Center et al., 2012
)
Assay type
ChIP-Seq
(
modENCODE Data Coordination Center et al., 2012
)
ChIP-chip
(
modENCODE Data Coordination Center et al., 2012
)
Reagent type
Result type
binding site identification
(
Kharchenko et al., 2011
)
Key genes
CTCF
His2Av
BEAF-32
Cp190
su(Hw)
(RNAi_target)
Export to HitList
His2Av
His3
His4
His1
His2B
(bait_protein)
Export to HitList
GO term(s)
chromatin organization
(
modENCODE Data Coordination Center et al., 2012
)
SO term(s)
Details
Sample preparation
Protocol
Mode of Assay
Data analysis
Comments
Files
Additional Information
Related Datasets
Parent projects (1)
Export to HitList
Project
Type
Title
modENCODE_chromatin
umbrella project
Umbrella project for modENCODE studies of chromosomal proteins by the Karpen group.
Biosamples generated (117)
Export to HitList
Biosample
Type
Title
BS_mE201
immortalized cell line
D. melanogaster, S2-DRSC cell line, source for ChIP.
BS_mE2653
immortalized cell line
D. melanogaster, ML-DmBG3-c2 cell line, source for ChIP.
BS_mE2654
immortalized cell line
D. melanogaster, ML-DmBG3-c2 cell line, source for ChIP.
BS_mE2655
immortalized cell line
D. melanogaster, S2-DRSC cell line, source for ChIP.
BS_mE2658
immortalized cell line
D. melanogaster, S2-DRSC cell line, source for ChIP.
BS_mE2659
immortalized cell line
D. melanogaster, ML-DmBG3-c2 cell line, source for ChIP.
BS_mE2660
immortalized cell line
D. melanogaster, S2-DRSC cell line, source for ChIP.
BS_mE288
immortalized cell line
D. melanogaster, ML-DmBG3-c2 cell line, source for ChIP.
BS_mE289
immortalized cell line
D. melanogaster, Kc167 cell line, source for ChIP.
BS_mE290
immortalized cell line
D. melanogaster, S2-DRSC cell line, source for ChIP.
Showing 10 / 117 records. Use
Export to HitList
above to see all
Raw data generated (117)
Export to HitList
Assay
Type
Title
ChIP-chip_mE3283_H2BK5ac_S2-DRSC
ChIP-chip
ChIP-chip of H2BK5ac in D. melanogaster, S2-DRSC cell line.
ChIP-chip_mE3537_H3K4me3_RNAi_CTCF_ML-DmBG3-c2
ChIP-chip
ChIP-chip of H3K4me3 in D. melanogaster, ML-DmBG3-c2 cell line, CTCF knockdown.
ChIP-chip_mE3583_H3K4me3_RNAi_CTCF_ML-DmBG3-c2
ChIP-chip
ChIP-chip of H3K4me3 in D. melanogaster, ML-DmBG3-c2 cell line, CTCF knockdown.
ChIP-chip_mE3679_H3K27me3_RNAi_BEAF-32_ML-DmBG3-c2
ChIP-chip
ChIP-chip of H3K27me3 in D. melanogaster, ML-DmBG3-c2 cell line, BEAF-32 knockdown.
ChIP-chip_mE3680_H3K27me3_RNAi_Cp190_ML-DmBG3-c2
ChIP-chip
ChIP-chip of H3K27me3 in D. melanogaster, ML-DmBG3-c2 cell line, Cp190 knockdown.
ChIP-chip_mE3681_H3K27me3_RNAi_CTCF_ML-DmBG3-c2
ChIP-chip
ChIP-chip of H3K27me3 in D. melanogaster, ML-DmBG3-c2 cell line, CTCF knockdown.
ChIP-chip_mE3683_H3K27me3_RNAi_su(Hw)_ML-DmBG3-c2
ChIP-chip
ChIP-chip of H3K27me3 in D. melanogaster, ML-DmBG3-c2 cell line, su(Hw) knockdown.
ChIP-chip_mE3691_H3K4me3_RNAi_su(Hw)_ML-DmBG3-c2
ChIP-chip
ChIP-chip of H3K4me3 in D. melanogaster, ML-DmBG3-c2 cell line, su(Hw) knockdown.
ChIP-chip_mE930_H3K18ac_CME-W1-Cl.8+
ChIP-chip
ChIP-chip of H3K18ac in D. melanogaster, CME-W1-Cl.8+ cell line.
ChIP-Seq_mE5595_His2Av_RNAi_His2Av_S2-DRSC
ChIP-Seq
ChIP-Seq of His2Av in D. melanogaster, S2-DRSC cell line, His2Av knockdown.
Showing 10 / 117 records. Use
Export to HitList
above to see all
Processed data (4)
Export to HitList
Result
Type
Title
Chromatin_types_mE1.S2
binding site identification
9-state chromatin model derived from analysis of histone modification ChIP, S2-DRSC cells.
Chromatin_types_mE2.BG3
binding site identification
9-state chromatin model derived from analysis of histone modification ChIP, ML-DmBG3-c2 cells.
Chromatin_types_mE_30-state.BG3
binding site identification
30-state chromatin model derived from analysis of histone modification ChIP, ML-DmBG3-c2 cells.
Chromatin_types_mE_30-state.S2
binding site identification
30-state chromatin model derived from analysis of histone modification ChIP, S2-DRSC cells.
Synonyms and Secondary IDs (2)
Reported As
Symbol Synonym
modENCODE_chromatin_histones_cells
Name Synonyms
Genome-wide localization of histones and their modifications in cell lines by ChIP-chip and ChIP-Seq.
(
modENCODE Data Coordination Center et al., 2012
)
Secondary FlyBase IDs
References (3)
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General Information
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Related Datasets
Synonyms and Secondary IDs
References