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FB2020_06, released Dec 22, 2020
Project: modENCODE_regulation_TFs
FB2020_06, released Dec 22, 2020
Project: modENCODE_regulation_TFs
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General Information
Name
modENCODE_regulation_TFs
Species
D. melanogaster
Project type
genome binding
FlyBase ID
FBlc0003373
Parent Project
modENCODE_regulation
Data Provider
Title
Genome-wide localization of transcription factors by ChIP-chip and ChIP-Seq.
Accessions
Overview
Description
Project attributes
Biosample type
whole organism
(
Negre et al., 2011
,
MacArthur et al., 2009
,
Li et al., 2008
,
Moses et al., 2006
)
Assay type
ChIP-Seq
(
Negre et al., 2011
)
ChIP-chip
(
Negre et al., 2011
,
MacArthur et al., 2009
,
Li et al., 2008
,
Moses et al., 2006
)
Reagent type
Result type
binding site identification
(
Nègre et al., 2011
,
modENCODE Consortium et al., 2010
)
Key genes
inv
eve
cad
sens
(transgene_used)
Export to HitList
inv
eve
cad
sens
Stat92E
Trl
z
gt
shn
sna
ftz
twi
kni
chinmo
da
slp1
GATAe
hb
ftz-f1
Mad
hkb
jumu
bab1
en
sbb
D
tll
ttk
bcd
dl
run
zfh1
Kr
Dll
Med
disco
Ubx
h
kn
prd
cnc
(bait_protein)
Export to HitList
GO term(s)
regulation of DNA-templated transcription, elongation
(
Nègre et al., 2011
)
SO term(s)
TF_binding_site
Details
Sample preparation
Protocol
Mode of Assay
Data analysis
Comments
Files
Additional Information
Related Datasets
Parent projects (1)
Export to HitList
Project
Type
Title
modENCODE_regulation
umbrella project
Umbrella project for modENCODE studies of transcriptional regulatory elements by the White group.
Biosamples generated (37)
Export to HitList
Biosample
Type
Title
BS_mE2569
whole organism
D. melanogaster, iso-1 strain, embryo (0-4 hr AEL), source for ChIP.
BS_mE2578
whole organism
D. melanogaster, cad-GFP, embryo (4-8 hr AEL), source for ChIP.
BS_mE605
whole organism
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
BS_mE606
whole organism
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
BS_mE609
whole organism
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
BS_mE624
whole organism
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
BS_mE625
whole organism
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
BS_mE626
whole organism
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
BS_mE627
whole organism
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
BS_mE628
whole organism
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
Showing 10 / 37 records. Use
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Biosamples reanalyzed (16)
Export to HitList
Result
Type
Title
BS_BDTNP_E11_z_ChIP
whole organism
D. melanogaster, embryo (stage 11), source for chromatin (z ChIP).
BS_BDTNP_E4-5_bcd_ChIP
whole organism
D. melanogaster, embryo (stage 4-5), source for chromatin (bcd ChIP).
BS_BDTNP_E4-5_da_ChIP
whole organism
D. melanogaster, embryo (stage 4-5), source for chromatin (da ChIP).
BS_BDTNP_E4-5_dl_ChIP
whole organism
D. melanogaster, embryo (stage 4-5), source for chromatin (dl ChIP).
BS_BDTNP_E4-5_gt_ChIP
whole organism
D. melanogaster, embryo (stage 4-5), source for chromatin (gt ChIP).
BS_BDTNP_E4-5_hb_ChIP
whole organism
D. melanogaster, embryo (stage 4-5), source for chromatin (hb ChIP).
BS_BDTNP_E4-5_kni_ChIP
whole organism
D. melanogaster, embryo (stage 4-5), source for chromatin (kni ChIP).
BS_BDTNP_E5_ftz_ChIP
whole organism
D. melanogaster, embryo (stage 5), source for chromatin (ftz ChIP).
BS_BDTNP_E5_Mad_ChIP
whole organism
D. melanogaster, embryo (stage 5), source for chromatin (Mad ChIP).
BS_BDTNP_E5_Med_ChIP
whole organism
D. melanogaster, embryo (stage 5), source for chromatin (Med ChIP).
Showing 10 / 16 records. Use
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above to see all
Raw data generated (37)
Export to HitList
Assay
Type
Title
ChIP-chip_mE2570_cad_E1-9
ChIP-chip
ChIP-chip of cad in D. melanogaster, iso-1 strain, embryo (0-4 hr AEL).
ChIP-chip_mE2571_Dichaete_E1-12
ChIP-chip
ChIP-chip of Dichaete in D. melanogaster, iso-1 strain, embryo (0-8 hr AEL).
ChIP-chip_mE2572_disco_E1-12
ChIP-chip
ChIP-chip of disco in D. melanogaster, iso-1 strain, embryo (0-8 hr AEL).
ChIP-chip_mE2578_cad_E9-12
ChIP-chip
ChIP-chip of cad in D. melanogaster, cad-GFP, embryo (4-8 hr AEL).
ChIP-chip_mE606_Dll_E1-15
ChIP-chip
ChIP-chip of Dll in D. melanogaster, iso-1 strain, embryo (0-12 hr AEL).
ChIP-chip_mE625_en_E1-15
ChIP-chip
ChIP-chip of en in D. melanogaster, iso-1 strain, embryo (0-12 hr AEL).
ChIP-chip_mE626_Dichaete_E1-15
ChIP-chip
ChIP-chip of Dichaete in D. melanogaster, iso-1 strain, embryo (0-12 hr AEL).
ChIP-chip_mE902_cad_E1-9
ChIP-chip
ChIP-chip of cad in D. melanogaster, cad-GFP, embryo (0-4 hr AEL).
ChIP-Seq_mE2626_cad_E1-9
ChIP-Seq
ChIP-Seq of cad in D. melanogaster, cad-GFP, embryo (0-4 hr AEL).
ChIP-Seq_mE2637_cad_E9-12
ChIP-Seq
ChIP-Seq of cad in D. melanogaster, cad-GFP, embryo (4-8 hr AEL).
Showing 10 / 37 records. Use
Export to HitList
above to see all
Raw data reanalyzed (16)
Export to HitList
Assay
Type
Title
ChIP-chip_BDTNP_bcd_E4-5
ChIP-chip
ChIP-chip of bcd in D. melanogaster, embryo (stage 4-5).
ChIP-chip_BDTNP_da_E4-5
ChIP-chip
ChIP-chip of da in D. melanogaster, embryo (stage 4-5).
ChIP-chip_BDTNP_dl_E4-5
ChIP-chip
ChIP-chip of dorsal in D. melanogaster, embryo (stage 4-5).
ChIP-chip_BDTNP_ftz_E5
ChIP-chip
ChIP-chip of ftz in D. melanogaster, embryo (stage 5).
ChIP-chip_BDTNP_gt_E4-5
ChIP-chip
ChIP-chip of gt in D. melanogaster, embryo (stage 4-5).
ChIP-chip_BDTNP_hb_E4-5
ChIP-chip
ChIP-chip of hb in D. melanogaster, embryo (stage 4-5).
ChIP-chip_BDTNP_kni_E4-5
ChIP-chip
ChIP-chip of kni in D. melanogaster, embryo (stage 4-5).
ChIP-chip_BDTNP_Mad_E5
ChIP-chip
ChIP-chip of Mad in D. melanogaster, embryo (stage 5).
ChIP-chip_BDTNP_Med_E5
ChIP-chip
ChIP-chip of Med in D. melanogaster, embryo (stage 5).
ChIP-chip_BDTNP_z_E11
ChIP-chip
ChIP-chip of zeste in D. melanogaster, embryo (stage 11).
Showing 10 / 16 records. Use
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Processed data (26)
Export to HitList
Result
Type
Title
mE1_TFBS_bab1
binding site identification
bab1 binding sites (peak calls) identified by ChIP-chip in embryos.
mE1_TFBS_cad
binding site identification
cad binding sites (peak calls) identified by ChIP-chip and ChIP-Seq in embryos.
mE1_TFBS_chinmo
binding site identification
chinmo binding sites (peak calls) identified by ChIP-chip in embryos.
mE1_TFBS_cnc
binding site identification
cnc binding sites (peak calls) identified by ChIP-chip in embryos.
mE1_TFBS_D
binding site identification
Dichaete binding sites (peak calls) identified by ChIP-chip in embryos.
mE1_TFBS_disco
binding site identification
disco binding sites (peak calls) identified by ChIP-chip in embryos.
mE1_TFBS_Dll
binding site identification
Dll binding sites (peak calls) identified by ChIP-chip in embryos.
mE1_TFBS_en
binding site identification
en binding sites (peak calls) identified by ChIP-chip in embryos.
mE1_TFBS_eve
binding site identification
eve binding sites (peak calls) identified by ChIP-chip in embryos.
mE1_TFBS_HSA
binding site identification
Transcription factor hot spots (high occupancy sites) identified by ChIP of 41 factors in embryos.
Showing 10 / 26 records. Use
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Synonyms and Secondary IDs (2)
Reported As
Symbol Synonym
modENCODE_regulation_TFs
Name Synonyms
Genome-wide localization of transcription factors by ChIP-chip and ChIP-Seq.
(
Nègre et al., 2011
)
Secondary FlyBase IDs
References (4)
Report Sections
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General Information
Overview
Details
Related Datasets
Synonyms and Secondary IDs
References