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General Information
Name
FlyAtlas2
Species
D. melanogaster
Project type
FlyBase ID
FBlc0003498
Parent Project
    Data Provider
    Title
    FlyAtlas 2- a new version of the Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data.
    Overview
    Description
    Reagent type
    Key genes
    GO term(s)
    SO term(s)
    Details
    Sample preparation
    Protocol
    Mode of Assay
    Data analysis

    FlyBase used samtools to filter for uniquely mapping reads ( NH:i:1 ) from the original FlyAtlas2 bam files; samtools was also used to calculate the number of mapped reads. The bedtools genomecov function was used to generate bedGraph coverage data from bam files. An in house FlyBase script converted bedGraph coverage data to wig format. Read length was obtained from related SRA accessions.

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    Additional Information
    Synonyms and Secondary IDs (3)
    Reported As
    Symbol Synonym
    FlyAtlas 2 Expression of genes in different tissues of Drosophila melanogaster
    FlyAtlas2
    Name Synonyms
    FlyAtlas 2- a new version of the Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data.
    Secondary FlyBase IDs
      References (2)