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Reference Report
| Reference | |||
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| Citation | Misra, S. (2000.4.6). Annotation identities: Category 4. (Export to RIS) | ||
| FlyBase ID | FBrf0126711 | ||
| Publication Type | Personal communication to FlyBase | ||
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| PubMed Abstract | |||
| Text of Personal Communication |
Category 4: genes that were in the penultimate XML but are now gone and
for which I can't find a replacement in the final xml (but I did no seq alignment). Sima checked these by BLASTing protein sequence from aa_embl.dros at the BDGP against the latest version of aa_gadfly.dros. Those that did not match, I tried the nucleic acid sequence from na_embl.dros against na_gadfly.dros and then against genomic scaffolds at NCBI.>βggt-II(347aa) =CG18627|FBan0018627|CT41437|FBan0018627 last_updated:000321(347aa) CT10156 == CG3023, gone >A(225)(711aa) =CG18255|FBan0018255|CT41348|FBan0018255 last_updated:000321(1277nt) (only found as nucleic acid, not as protein) CG8307 no jam, gone>Act87E(376aa) =CG10067|FBan0010067|CT28343|FBan0010067 last_updated:000321(376aa) CT34012 no CG and CT26437 CG9278 gone >Aprt(182aa) =CG18315|FBan0018315|CT41563|FBan0018315 last_updated:000321(182aa) CG1833 CT5556, gone >axo(1685aa) =CG18296|FBan0018296|CT41507|FBan0018296 last_updated:000321(482aa) CG7517 CT1277, gone >Bbbf1(638aa) =no gene in GadFly but matches Celera AE003608 (repeated many times in this scaffold sequence) CT39704 == CG15836, gone>BG:DS01368.1(514aa) =CG18507|FBan0018507|CT42208|FBan0018507 last_updated:000321(463aa) CG7153 CT22111 gone >Eip93F(1221aa) =CG18389|FBan0018389|CT41792|FBan0018389 last_updated:000321(1075aa) CG6505 CT20215, gone >Gprk1(700aa) =no gene in GadFly but matches Celera AE002943, AE002613, AE002814, AE003008, AE003017 (split among many scaffolds) CT39791 == CG17882 gone>Optix(60aa) =CG18455|FBan0018455|CT42028|FBan0018455 last_updated:000321(218aa) CG8718 CT9483, gone >Os9(159aa) =CG10658|FBan0010658|CT29854|FBan0010658 last_updated:000321 (only found as nucleic acid, not as protein) CG10656 CT29836, gone>Shark(950aa) =CG18247|FBan0018247|CT41326|FBan0018247 last_updated:000321(939aa) CG5801 and CG11991 both gone |
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| FB2013_03 | |||
| FB2013_02 | |||
| All updates | Click here to see a list of all updates to this record from FB2010_08 and on. | ||
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| Language of Publication | English | ||
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Data from Reference
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| Genes (11)
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