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Citation
Misra, S. (2000.8.9). Matches of the nc5 class to CGs. 
FlyBase ID
FBrf0129569
Publication Type
Personal communication to FlyBase
Abstract
PubMed ID
PubMed Central ID
Text of Personal Communication
nc5: genes with no SWP/TREMBL/PIR entry or protein_id but which look
  like STSs to me (807).  Spectacularly boring but presumably easy.
  The large majority are P-element STSs.
First installment, 8/9/00
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>Aats-gln AQ034065 insertion at base 569 in the 603bp
=l(3)05461 by BLASTN analysis by Joe against GadFly
=CG10506|FBan0010506|CT29352|FBan0010506  last_updated:000321 (2327bp)
(forward orientation at nt 50 of transcript)
>Aats-ile AQ026160 insertion at base 596 in the 603 bp
=l(3)00827 by BLASTN analysis by Joe against GadFly
=CG11471|FBan0011471|CT36277|FBan0011471  last_updated:000321 (3317bp)
=CG11471|FBan0011471|CT36261|FBan0011471  last_updated:000321 (3278bp)
=CG11471|FBan0011471|CT36257|FBan0011471  last_updated:000321 (3366bp)
(reverse orientation at nt 30 of transcript)
>Aats-thr AQ034143 insertion at base 503 in the 764 bp
=l(2)k04203 by BLASTN analysis by Joe against GadFly and at BDGP BLAST
=CG5353|FBan0005353|CT37701|FBan0005353  last_updated:000321 (2345bp)
(reverse orientation at nt 928 of GadFly gene region in first intron)
>Aats-val AQ026133 insertion at base 001 in the 440 bp
=l(2)rI255 by BLASTN analysis by Joe against GadFly
=CG4062|FBan0004062|CT13504|FBan0004062  last_updated:000321 (3224bp)
(forward orientation 22bp upstream of transcript)
>Acap AQ034171 insertion at base 237 in the 877 bp
=l(2)k00619 by BLASTN analysis by Joe against GadFly
=CG4775|FBan0004775|CT15363|FBan0004775  last_updated:000321 (992bp)?
(reverse orientation 75bp upstream of transcript; CG5118 starts 605bp
upstream on opposite strand, 530bp from insert)
>Acon AQ034137 insertion at base 294 in the 579bp
=l(2)k02301 by BLASTN analysis by Joe against GadFly
=CG9244|FBan0009244|CT5286|FBan0009244  last_updated:000321 (2676bp)
(forward orientation 18bp upstream of transcript)
>Adk2-44B AQ026101 insertion at base 032 in the 39 bp
=l(2)k16120 by BLASTN analysis by Joe against GadFly and BLAST at BDGP
=CG3140|FBan0003140|CT10496|FBan0003140  last_updated:000321 (1072bp)?
(reverse orientation at nt 177 of transcript)
Doesn't make sense since CG3140 at 60B1--mistake
no matches to genomic sequence except at 60B1
>Adk2-60B AQ025735 insertion at base 057 in the 64 bp
=l(2)k04201 by BLASTN analysis by Joe against GadFly
=CG3140|FBan0003140|CT10496|FBan0003140  last_updated:000321 (1072bp)
(reverse orientation at nt 72 of transcript)
>Aly AQ026178 insertion at base 053 in the 60 bp
=l(3)02267 by BLASTN analysis by Joe against GadFly
=CG1101|FBan0001101|CT1611|FBan0001101  last_updated:000321 (1321bp)
(reverse orienatation at nt 5 of transcript)
>Bka AQ025597 insertion at base 190 in the 297 bp
=l(2)02695 by BLASTN analysis by Joe against GadFly
=CG4539|FBan0004539|CT14682|FBan0004539  last_updated:000321 (672bp)
(forward orientation at nt 337 of transcript)
>cap AQ026423 insertion at base 119 in the 126 bp
=ms(3)00940 by BLASTN analysis by Joe against GadFly
=CG9748|FBan0009748|CT27543|FBan0009748  last_updated:000321 (3138bp)
(forward orientation at nt 255 of transcript)
>capt AQ034171 insertion at base 237 in the 877 bp
=l(2)k00619 by BLASTN analysis by Joe against GadFly
=CG4775|FBan0004775|CT15363|FBan0004775  last_updated:000321 (992bp)
(reverse orientation 75bp upstream of transcript; CG5061 starts 605bp
upstreamon opposite strand, 530bp away from insert)
>cbx AQ026413 insertion at base 142 in the 149 bp
=ms(2)05704 by BLASTN analysis by Joe against GadFly
=CG10536|FBan0010536|CT29563|FBan0010536  last_updated:000321 (883bp)?
(reverse orientation 46bp upstream of transcript; CG1675 starts 120bp
downstream on opposite strand, 74bp away from insert)
>CKI-related AQ073361 insertion probably at base 1 of 298bp
=ms(3)04895 by BLASTN analysis by Joe against GadFly
=CG6963|FBan0006963|CT21414|FBan0006963  last_updated:000321 (3033bp)
(forward orientation probably at 1106 of transcript)
>Coprox AQ025946 insertion at base 067 in the 416 bp
=l(2)k11018 by BLASTN analysis by Joe against GadFly
=CG3433|FBan0003433|CT11567|FBan0003433  last_updated:000321 (1358bp)
(reverse orientation at nt 58 of transcript)
>dev  AQ026309 insertion at base 001 in the 149 bp
=l(3)j2E11 by BLASTN analysis by Joe against GadFly
=CG6833|FBan0006833|CT21153|FBan0006833  last_updated:000321 (980bp)
(reverse orientation at nt 75 of transcript)
>Dmn AQ026100 insertion at base 345 in the 352 bp
=l(2)k16109 by BLASTN analysis by Joe against GadFly
=CG8269|FBan0008269|CT7980|FBan0008269  last_updated:000321 (1336bp)
(reverse orientation at nt 10 of transcript)
>DNAprim AQ026282 insertion at base 223 in the 723 bp
=l(3)j10B2 by BLASTN analysis at BDGP against GadFly
=CG5553|FBan0005553|CT17562|FBan0005553  last_updated:000321 (1606bp)
(reverse orientation at nt 22 of transcript)
>domino AQ034011 insertion at base 377 in the 416 bp
=l(2)k08108 by BLASTN analysis at BDGP against all
=CG9696|FBan0009696|CT27330|FBan0009696  last_updated:000321 (10116bp)
(forward orientation at nt 589 of transcript)
>Dot AQ025853 insertion at base 093 in the 100 bp
=l(2)k08012 by BLASTN analysis at BDGP against all
=no annotations or genomic sequence in GadFly
>dpld AQ025871 insertion at base 001 in the 167 bp
=l(2)k08815 by BLASTN analysis at BDGP against all
=CG1624|FBan0001624|CT4340|FBan0001624  last_updated:000321 
(forward orientation at nt 5 of transcript)
>EfTuM AQ026265 insertion at base 016 in the 149 bp
=l(3)L4569 by BLASTN analysis by Joe against GadFly
=CG6050|FBan0006050|CT18977|FBan0006050  last_updated:000321 (1576bp)
(forward orientation at nt 488 of transcript)
>eIF-3p40 AQ025877 insertion at base 112 in the 119bp
=l(2)k09003 by BLASTN analysis by Joe against GadFly
=CG9124|FBan0009124|CT26154|FBan0009124  last_updated:000321 (1161bp)
(reverse orientation at nt 51 of transcript)
>Fatp AQ034026 insertion at base 137 in the 211 bp
=l(2)k10307 by BLASTN analysis by Joe against GadFly
=CG7400|FBan0007400|CT22721|FBan0007400  last_updated:000321 (2681bp)
(forward orienation at nt 448 of transcript)
>fs(2)ltoPP43 AQ025856 insertion at base 078 in the 85 bp
=l(2)k08115 by BLASTN analysis by Joe against GadFly
=CG10528|FBan0010528|CT37301|FBan0010528  last_updated:000321 (1216bp)
(forward orientation at nt 92 of transcript)
>Hmgs  AQ025645 insertion at base 029 in the 151 bp
=l(2)06214 by BLASTN analysis by Joe against GadFly
=CG16796|FBan0016796|CT37345|FBan0016796  last_updated:000321 (1939bp)
(forward orientation at nt 60 of transcript)
>Hsp60B  AQ026417 insertion at base 320 in the 327 bp
=ms(2)06619 by BLASTN analysis by Joe against GadFly
=CG2830|FBan0002830|CT9652|FBan0002830  last_updated:000321 (2043bp)
(forward orientation at of nt 77 of transcript)
>l(2)02637 AQ025596 insertion at base 162 in the 259 bp
=l(2)02637 by BLASTN analysis by Joe against GadFly
=CG10109|FBan0010109|CT28455|FBan0010109  last_updated:000321 (1689bp)
(reverse orientation at nt 171 of transcript)
>l(2)03221 AQ025607 insertion at base 144 in the 151 bp
=l(2)03221 by BLASTN analysis by Joe against GadFly
=CG17753|FBan0017753|CT11457|FBan0017753  last_updated:000321 (1226bp)
(reverse orientation 78bp upstream of nt 14 in transcript, in first
intron?; CG11866 upstream ends 160bp from 3' end of gene, CG11867
downstream starts 4.9kb away)
>l(2)04227 AQ025624 insertion at base 222 in the 229 bp
=l(2)04227 by BLASTN analysis by Joe against GadFly
=CG8938|FBan0008938|CT25660|FBan0008938  last_updated:000321 (1416bp)?
(reverse orientation 124bp upstream of transcript; CG15613 downstream
starts 5439bp away from start of CG8938, 5315bp away from insertion)
>l(2)04431 AQ073281 insertion probably at base 4 in the 159bp
=l(2)04431 by BLASTN analysis by Joe against GadFly
=CG6392|FBan0006392|CT19928|FBan0006392  last_updated:000321 (5868bp)
(reverse orientation probably at nt 5592 of transcript)
>l(2)05091 AQ025631 insertion probably at base 063 in the 475 bp
=l(2)05091 by BLASTN analysis by Joe against GadFly
=CG8946|FBan0008946|CT25678|FBan0008946  last_updated:000321 (1782bp)
=CG8946|FBan0008946|CT25696|FBan0008946  last_updated:000321 (1746bp)
(forward orientation at nt 271 of CT25678, 235 of CT25696)
>l(2)05337 AQ025634 insertion probably at base 033 in the 40 bp
=l(2)05337 by BLASTN analysis by Joe against GadFly
=CG9239|FBan0009239|CT26270|FBan0009239  last_updated:000321 (5404bp)
(reverse orientation at nt 169 of transcript)
>l(2)05510 AQ025639 insertion probably at base 611 in the 618 bp
=l(2)05510 by BLASTN analysis by Joe against GadFly
=CG13432|FBan0013432|CT32789|FBan0013432  last_updated:000321 (1355bp)
(forward orientation 371bp downstream of nt 80 of transcript, in first intron)
>Mrp17  AQ034077 insertion at base 376 in the 869 bp
=l(3)10534 using Joe's BLASTN analysis of GadFly and BLASTN at BDGP
=CG5012|FBan0005012|CT16104|FBan0005012  last_updated:000321 (642bp)
(forward orientation 29bp upstream of transcript)
>Nik AQ026296 insertion at base 098 in the 105 bp
=l(3)j1E2 using Joe's BLASTN analysis of GadFly
=CG16973|FBan0016973|CT37669|FBan0016973  last_updated:000321 (4635bp)
(reverse orientation at nt 5 of transcript)
>Nnp-1 AQ034006 insertion at base 306 in the 531 bp
=l(2)k07826 using Joe's BLASTN analysis of GadFly
=CG12396|FBan0012396|CT26519|FBan0012396  last_updated:000321 (2306bp)
(forward orientation at nt 1 of transcript)
>ox AQ026399 insertion at base 263 in the 270 bp
=ms(2)00815 using Joe's BLASTN analysis of GadFly
=CG8657|FBan0008657|CT25080|FBan0008657  last_updated:000321 (1896bp)?
(reverse orientation 143bp upstream of start of transcript; CG12373 ends
547bp upstream of transcript, 404bp away)
>Pdsw AQ025920 insertion at base 014 in the 124 bp
=l(2)k10101 using Joe's BLASTN analysis of GadFly
=CG8844|FBan0008844|CT9259|FBan0008844  last_updated:000321 (604bp)
(forward orientation at nt 195 of transcript)
>Pros26S-RS6A AQ026194 insertion at base 246 in the 253 bp
=l(3)04210 using Joe's BLASTN analysis of GadFly
=CG10370|FBan0010370|CT29122|FBan0010370  last_updated:000321 (1773bp)
(reverse orientation at nt 441 of transcript)
>RFeSP AQ034029 insertion at base 019 in the 228 bp
=l(2)k11704 using Joe's BLASTN analysis of GadFly
=CG7361|FBan0007361|CT22681|FBan0007361  last_updated:000321 (773bp)
(reverse orientation nt 35 of transcript)
>RpL30 AQ025911 insertion at base 197 in the 204 bp
=l(2)k09918 using Joe's BLASTN analysis of GadFly
=CG10652|FBan0010652|CT29824|FBan0010652  last_updated:000321 (442bp)?
(reverse orientation 120bp upstream of start of transcript; CG15171 is
1861bp away from CG10652 on opposite strand)
>Rpp30 AQ034135 insertion at base 287 in the 624 bp
=l(2)k01901 using Joe's BLASTN analysis of GadFly
=CG11606|FBan0011606|CT33141|FBan0011606  last_updated:000321 (925bp)
(reverse orientation 26bp upstream of start of transcript)
>Rs1 AQ025895 insertion at base 247 in the 318bp
=l(2)k09514 using Joe's BLASTN analysis of GadFly
=CG2173|FBan0002173|CT7100|FBan0002173  last_updated:000321 (2389bp)
(reverse orientation at nt 75 of transcript)
>scat AQ026412 insertion at base 013 in the 505 bp
=ms(2)05289 using Joe's BLASTN analysis of GadFly
=CG3766|FBan0003766|CT12590|FBan0003766  last_updated:000321 (3072bp)
(reverse orientation at nt 1105 of transcript)
>sdl AQ026431 insertion at base 028 in the 35 bp
=ms(3)05090 using Joe's BLASTN analysis of GadFly
=CG12363|FBan0012363|CT24202|FBan0012363  last_updated:000321 (645bp)
(reverse orientation at nt 58 of transcript)
>sec13 AQ026165 insertion at base 052 in the 287 bp
=l(3)01031 using Joe's BLASTN analysis of GadFly
=CG6773|FBan0006773|CT21025|FBan0006773  last_updated:000321 (1511bp)
(forward orientation at nt 283 of trancript)
>Sip1  AQ025652 insertion at base 184 in the 291bp
=l(2)06373 using Joe's BLASTN analysis of GadFly
=CG10939|FBan0010939|CT30645|FBan0010939  last_updated:000321 (1697bp)
(forward orientation, at nt 17 of transcript)
>SrpRβ AQ026363 insertion at base 351 in the 796 bp
=l(3)rK561 using Joe's BLASTN analysis of GadFly
=CG5950|FBan0005950|CT18686|FBan0005950  last_updated:000321 (1557bp)
(reverse orientation, around nt 832 of transcript)
>Tom34 AQ073315 insertion at base 1 in the 426 bp?
=l(2)03692 using Joe's BLASTN analysis of GadFly
=CG2708|FBan0002708|CT9235|FBan0002708  last_updated:000321 (3067bp)
(forward orientation, probably at nt 27 of transcript)
>Treh AF083508 632 bp
=cDNA sequence using Joe's BLASTN analysis of GadFly
=CG9364|FBan0009364|CT26593|FBan0009364  last_updated:000321 (1892bp)
=CG9364|FBan0009364|CT26591|FBan0009364  last_updated:000321 (1948bp)
=CG9364|FBan0009364|CT26595|FBan0009364  last_updated:000321 (1813bp)
>Vha36 AQ034158 insertion at base 354 in the 809 bp
=l(2)k07207 using Joe's BLASTN analysis of GadFly
=CG8186|FBan0008186|CT20335|FBan0008186  last_updated:000321 (1054bp)
(forward orientation at nt 59 of transcript)
>Vha68-2 U59147 4405bp
=cDNA sequence using Joe's BLASTN analysis of GadFly
=CG3762|FBan0003762|CT37353|FBan0003762  last_updated:000321 (2048bp)
=CG3762|FBan0003762|CT12570|FBan0003762  last_updated:000321 (2074bp)
=CG3762|FBan0003762|CT37359|FBan0003762  last_updated:000321 (2136bp)
>Xbp1 AQ034031 insertion at base 585 in the 804bp
=l(2)k13803 using Joe's BLASTN analysis of GadFly
=CG9415|FBan0009415|CT26690|FBan0009415  last_updated:000321 (2024bp)
(reverse orientation at nt 88 of transcript)
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