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| Citation | Misra, S. (2001.8.16). FlyBase error report for CG17439 on Thu Aug 16 15:15:33 2001. (Export to RIS) | ||
| FlyBase ID | FBrf0137499 | ||
| Publication Type | Personal communication to FlyBase | ||
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| Text of Personal Communication |
From: FlyBase-error@XXXXXXXXXXXXXXX
Date: Thu, 16 Aug 2001 15:15:33 \-0700 (PDT) To: flybase-updates@XXXXXXXXXXXXXXX Cc: sima@XXXXXXXXXXXXXXX Subject: FlyBase error report for CG17439 on Thu Aug 16 15:15:33 2001 Error report from Sima Misra (sima@XXXXXXXXXXXXXXX) Gene or accession: CG17439 Release: 1 Gene annotation error Gene CG17439 has a mistake in the supporting evidence or functional assignment. Comments: CG17439 can be deleted from GadFly--it appears to be part of an X element (67% identity but over whole length of gene). Query= CG17439|FBgn0037210|CT38533|FBan0017439 GO:<up></up> located on: 3L 80B2-80B2; |cDNA sequence (616 letters) Database: /data/blast/db/na_te.dros 55 sequences; 282,078 total letters. Searching....10....20....30....40....50....60....70....80....90....100% done Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N gb|AF237761|X-element ROXELEMENT 4740bp 720 1.1e-39 2 gb|X06950|G-element DMREPG 4346bp Derived from X06950 (g8... 130 0.9998 1>gb|AF237761|X-element ROXELEMENT 4740bp Length = 4740 Plus Strand HSPs: Score = 720 (114.1 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39 Identities = 260/387 (67%), Positives = 260/387 (67%), Strand = Plus / Plus Query: 236 GACGTAGGCCT-ACCCGCGACGTCAATGTTG-GC-CACATTTCATGCTACTGACGTCCAG 292 ||||| || | ||| | | ||| | || | ||| || | | || ||||| Sbjct: 3855 GACGTGTGCGTCACCTAC-AGGTCCC-GATGCGAGCACGACGCAGCCGA-TGGTATCCAG 3911 Query: 293 GACTTCTCATTAACATTTG-CGGAATGGGCAAAACGCTGGAACATTGGCATCAATGGTGA 351 ||||| ||| | | || |||||||||||| ||| ||||| |||||||||||| | Sbjct: 3912 GACTTTGCAT-ACCGGTTCTCGGAATGGGCAAGACGATGGAATATTGGCATCAATAGCAG 3970 Query: 352 CAAATCTGCGAATGTGTGCTACACGCTGAAAAGGAAAACATCACCGGCTTTACT-CATCG 410 ||||| || || |||| ||| | || ||| ||| ||||| | | || ||||| Sbjct: 3971 TAAATCCAACAACGTCTGCTTCACTTTAAAGCGGAGAACGCCACCGCCCGT-CTACATCG 4029 Query: 411 ATGGC-TCCCTTATCCCACAGTCCAGTTCAGCCAAATATCTTGGTGTAATATTGGATCGG 469 | | |||| | |||||| | | |||| || || ||||| || | ||||||| Sbjct: 4030 AGGAAGTCCCCG-TACCACAGCCGAACGCAGCAAAGTACCTTGGAGTGCTTCTGGATCGC 4088 Query: 470 AGACTAAACTTCTCGAAGCAAAATAGTGCGATAAGAGTGCGTATACGTGCAGCAGCCTCA 529 ||||| | || || ||||| | | || ||| ||| ||||||| | | Sbjct: 4089 AGACTCACATTTTCCAAGCATGTGACCGACATCAGAACGCGCCTACGTGCTAAGGTGGCG 4148 Query: 530 AAGCACTTCTGGCTAATTAATTCGCGAAGTAAAGTGTCACTCTCCAACAAGGTGACAATT 589 ||||||| ||||||| || |||||| |||||| |||| || ||||||||| |||||||| Sbjct: 4149 AAGCACTACTGGCTACTTTCTTCGCGCAGTAAATTGTCGCTATCCAACAAGCTGACAATT 4208 Query: 590 TAGAAGCAAATTATAGCGCCAATATGG 616 || || || || |||| |||| ||| Sbjct: 4209 TACAAACAGATCCTAGCACCAAACTGG 4235 Score = 490 (79.6 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29 Identities = 194/293 (66%), Positives = 194/293 (66%), Strand = Plus / Plus Query: 95 TCGTATCTCGAAAAGAGAAGATTTGCGGTACGATTCCATCCGGCCCTGTCAAATGAGCAT 154 ||||| || ||| || || || || || || || ||| | || | || | ||||| Sbjct: 3669 TCGTACCTGGAAGGAAGGAGGTTCGCTGTGCGCTTTCATTCAGCAATTTCCACCGAGCAC 3728 Query: 155 AATGTGGCAGCCGGAGTACCACA-GGTAAGTGAACTTGGCCCGCTGCTTTACTGCCTGTA 213 || |||||||| || || ||||| |||| ||| || ||||| ||||| ||||||||||| Sbjct: 3729 AACGTGGCAGCTGGTGTTCCACAAGGTA-GTGTCCTCGGCCCCCTGCTCTACTGCCTGTA 3787 Query: 214 CAGCTACGACATGCCTCGGCCAGACGTAGGCCTACCCGCGACGTCAATGTTGGCCACATT 273 ||| |||||||||| | |||||| ||| |||| || || || |||||||||||||| Sbjct: 3788 TAGCCACGACATGCCGCAGCCAGATGTAAGCCTTTACGGGAAATCTATGTTGGCCACATT 3847 Query: 274 TCATGCTACTGACGTCCAGGACTTCT-CATTAACATTTGCG-GAATGG-GCAAAACGCTG 330 | | | |||||| | | || || | |||| | | | ||| || || Sbjct: 3848 TGCCG--A-TGACGTGTGCGTCACCTACAGGTCCCGATGCGAGCACGACGCAGC-CGATG 3903 Query: 331 GAACATTGGCATCAATGGTGACAAAT-CTGCGAATGTGTGCTACACGCTGAAA 382 | | || | | || || | || ||||| | || | ||| || || Sbjct: 3904 GTATCCAGG-A-CTTTGCATACCGGTTCTCGGAATG-G-GCAAGACGATGGAA 3952 Score = 309 (52.4 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39 Identities = 81/105 (77%), Positives = 81/105 (77%), Strand = Plus / Plus Query: 1 TAAAGACACTACCGAGATGTGTGATCCTCTACATTACGTTGTTATTCAAGGCTATTGTGA 60 | ||| | || || ||| | |||||||||||| |||||| | ||||| |||||||||| Sbjct: 3217 TGAAGGCCCTGCCCAGACAAGCGATCCTCTACATAACGTTGGTTTTCAACGCTATTGTGA 3276 Query: 61 GACTGCAATACTTCCTTCCACAGTGGAAGCTCGGTCGTATCTCGA 105 | |||||||||||| | |||||||||||||| ||||| | Sbjct: 3277 GGTTGCAATACTTCCCTTATCAGTGGAAGCTCGGGATAATCTCCA 3321 |
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| Language of Publication | English | ||
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