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| Reference | |||
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| Citation | Misra, S. (2001.8.16). FlyBase error report for CG5929 on Thu Aug 16 15:34:11 2001. (Export to RIS) | ||
| FlyBase ID | FBrf0137502 | ||
| Publication Type | Personal communication to FlyBase | ||
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| Text of Personal Communication |
From: FlyBase-error@XXXXXXXXXXXXXXX
Date: Thu, 16 Aug 2001 15:34:11 \-0700 (PDT) To: flybase-updates@XXXXXXXXXXXXXXX Cc: sima@XXXXXXXXXXXXXXX Subject: FlyBase error report for CG5929 on Thu Aug 16 15:34:11 2001 Error report from Sima Misra (sima@XXXXXXXXXXXXXXX) Gene or accession: CG5929 Release: 1 Gene annotation error Gene CG5929 has incorrect exon/intron structure or translation start site. Comments: CG5929 shows a good match (76%) to the X element from 1287-1664 of its 2084bp. Query= CG5929|FBgn0032982|CT18625|FBan0005929 GO:<up></up> located on: 2L 40C3-40D1; |cDNA sequence (2084 letters) Database: /data/blast/db/na_te.dros 55 sequences; 282,078 total letters. Searching....10....20....30....40....50....60....70....80....90....100% done Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N gb|AF237761|X-element ROXELEMENT 4740bp 603 1.4e-35 2>gb|AF237761|X-element ROXELEMENT 4740bp Length = 4740 Plus Strand HSPs: Score = 603 (96.5 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35 Identities = 163/213 (76%), Positives = 163/213 (76%), Strand = Plus / Plus Query: 1287 TTTGTGCGGCGCTACGAGATCGATATTCTGCTGCTCAGCGAGACTCATTGCAAGGAGGCA 1346 || ||||| || |||| |||||| | | |||||||||||||| || ||||||| |||| Sbjct: 1896 TTCGTGCGACGTCACGAAATCGATGTATTACTGCTCAGCGAGACACACTGCAAGGGGGCA 1955 Query: 1347 CAGGCACCCAAAATATTTGGATTTG-AGTCTTACACTGCCAACGACCTGAGCGACGGTAA 1405 || | || || |||| ||||||| || || |||||||||| || | ||| | || || Sbjct: 1956 GAGACGCCTAAGCTATTCGGATTTGTAGCCT-ACACTGCCAATGATCCGAGTGGTGGCAA 2014 Query: 1406 CGCCAAAGGTGTTGCAGCGATCCTGGTCAAATCCGGCCTAGTCCACTTTCCTCTTACACC 1465 ||||||||| | ||||| ||| | ||||| |||| | ||||||||| || ||||| Sbjct: 2015 CGCCAAAGGCGGAGCAGCTATCTTAATCAAAAATAGCCTTGCCCACTTTCCGCTAACACC 2074 Query: 1466 AATAGCCACTGACGAGGAGCAACTCGCGTCTGC 1498 ||||||||||| | ||| |||||| ||| | || Sbjct: 2075 AATAGCCACTGCCAAGGTGCAACTTGCGCCGGC 2107 Score = 469 (76.4 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35 Identities = 145/203 (71%), Positives = 145/203 (71%), Strand = Plus / Plus Query: 1463 ACCAAT-AGCCACTGACGAGGAGCAACTCGCGTCTGCCCTACGAGATATAAGCTCCCTAG 1521 ||||| || || || | | ||| | || |||| | || || | ||| |||| Sbjct: 2278 ACCAAAGAGGCATTG-C-ATTAGCGAATCTCGTCCTAAATTCG-GAGGTGGACTCGCTAG 2334 Query: 1522 CCACCGGAGGTCCTACAAGATTCCCGTTCGGCAGTAGAGGCTCCCCAGGCTATATAGATT 1581 | || ||||| || ||||||| ||||| |||| |||||||||| ||||| || || |||| Sbjct: 2335 CAACAGGAGGACCAACAAGATACCCGTACGGCTGTAGAGGCTCACCAGGGTACATCGATT 2394 Query: 1582 TTGCTGTCAGCAAGGGCATTCTGGATATGCACGATGAAATACGTTCCGTTGCTGAGCTCA 1641 |||| | | ||||| | |||| || |||| | | ||| || | |||| |||||| | Sbjct: 2395 TTGCACTGACAAAGGGTGTGCTGGGCATCCACGCTAACATAAGTGCGGTTGTTGAGCTTA 2454 Query: 1642 GCTCCGACCACCTACCGCTTATA 1664 ||||||||||||| || || || Sbjct: 2455 GCTCCGACCACCTGCCTCTGGTA 2477 |
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| Language of Publication | English | ||
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