Subject: Drosdel Release 4 data
Hi Rachel,
Please find a snapshot of the DrosDel data set from our database. All
mapping information is for Release 4 of the genome sequence.
There should be three files in total.
release4_dels_flybase.out
release4_insertions_flybase.out
release4_made_confirm_genetic_flybase.out
Definitions: in release4_made_confirm_genetic_flybase.out
'confirm' means confirmed by 3-step PCR confirmation as shown in
http://www.drosdel.org.uk/del_confirm.php.
'genetic' means confirmed by lack of complementation to a known lethal
mutation predicted to fall between the progenitor insertions.
All aberrations in release4_made_confirm_genetic_flybase.out should be
represented as 'Deficiency' as opposed to 'Potential Deficiency'.
These are either those lines which are confirmed by both PCR and
genetic means, or lines that have been deposited in Szeged.
Notes:
In these files '5-' and '-3' lines correspond to P{RS5} and P{RS3}
insertions, respectively.
Cheers,
Ed
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Dr. Ed Ryder
Department of Genetics, University of Cambridge,
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