Reference Report

Reference
Citation	Drosophila 12 Genomes Consortium, Clark, A.G., Eisen, M.B., Smith, D.R., Bergman, C.M., Oliver, B., Markow, T.A., Kaufman, T.C., Kellis, M., Gelbart, W., Iyer, V.N., Pollard, D.A., Sackton, T.B., Larracuente, A.M., Singh, N.D., Abad, J.P., Abt, D.N., Adryan, B., Aguade, M., Akashi, H., Anderson, W.W., Aquadro, C.F., Ardell, D.H., Arguello, R., Artieri, C.G., Barbash, D.A., Barker, D., Barsanti, P., Batterham, P., Batzoglou, S., Begun, D., Bhutkar, A., Blanco, E., Bosak, S.A., Bradley, R.K., Brand, A.D., Brent, M.R., Brooks, A.N., Brown, R.H., Butlin, R.K., Caggese, C., Calvi, B.R., Bernardo de Carvalho, A., Caspi, A., Castrezana, S., Celniker, S.E., Chang, J.L., Chapple, C., Chatterji, S., Chinwalla, A., Civetta, A., Clifton, S.W., Comeron, J.M., Costello, J.C., Coyne, J.A., Daub, J., David, R.G., Delcher, A.L., Delehaunty, K., Do, C.B., Ebling, H., Edwards, K., Eickbush, T., Evans, J.D., Filipski, A., Findeiss, S., Freyhult, E., Fulton, L., Fulton, R., Garcia, A.C., Gardiner, A., Garfield, D.A., Garvin, B.E., Gibson, G., Gilbert, D., Gnerre, S., Godfrey, J., Good, R., Gotea, V., Gravely, B., Greenberg, A.J., Griffiths-Jones, S., Gross, S., Guigo, R., Gustafson, E.A., Haerty, W., Hahn, M.W., Halligan, D.L., Halpern, A.L., Halter, G.M., Han, M.V., Heger, A., Hillier, L., Hinrichs, A.S., Holmes, I., Hoskins, R.A., Hubisz, M.J., Hultmark, D., Huntley, M.A., Jaffe, D.B., Jagadeeshan, S., Jeck, W.R., Johnson, J., Jones, C.D., Jordan, W.C., Karpen, G.H., Kataoka, E., Keightley, P.D., Kheradpour, P., Kirkness, E.F., Koerich, L.B., Kristiansen, K., Kudrna, D., Kulathinal, R.J., Kumar, S., Kwok, R., Lander, E., Langley, C.H., Lapoint, R., Lazzaro, B.P., Lee, S.J., Levesque, L., Li, R., Lin, C.F., Lin, M.F., Lindblad-Toh, K., Llopart, A., Long, M., Low, L., Lozovsky, E., Lu, J., Luo, M., Machado, C.A., Makalowski, W., Marzo, M., Matsuda, M., Matzkin, L., McAllister, B., McBride, C.S., McKernan, B., McKernan, K., Mendez-Lago, M., Minx, P., Mollenhauer, M.U., Montooth, K., Mount, S.M., Mu, X., Myers, E., Negre, B., Newfeld, S., Nielsen, R., Noor, M.A., O'Grady, P., Pachter, L., Papaceit, M., Parisi, M.J., Parisi, M., Parts, L., Pedersen, J.S., Pesole, G., Phillippy, A.M., Ponting, C.P., Pop, M., Porcelli, D., Powell, J.R., Prohaska, S., Pruitt, K., Puig, M., Quesneville, H., Ram, K.R., Rand, D., Rasmussen, M.D., Reed, L.K., Reenan, R., Reily, A., Remington, K.A., Rieger, T.T., Ritchie, M.G., Robin, C., Rogers, Y.H., Rohde, C., Rozas, J., Rubenfield, M.J., Ruiz, A., Russo, S., Salzberg, S.L., Sanchez-Gracia, A., Saranga, D.J., Sato, H., Schaeffer, S.W., Schatz, M.C., Schlenke, T., Schwartz, R., Segarra, C., Singh, R.S., Sirot, L., Sirota, M., Sisneros, N.B., Smith, C.D., Smith, T.F., Spieth, J., Stage, D.E., Stark, A., Stephan, W., Strausberg, R.L., Strempel, S., Sturgill, D., Sutton, G., Sutton, G.G., Tao, W., Teichmann, S., Tobari, Y.N., Tomimura, Y., Tsolas, J.M., Valente, V.L., Venter, E., Venter, J.C., Vicario, S., Vieira, F.G., Vilella, A.J., Villasante, A., Walenz, B., Wang, J., Wasserman, M., Watts, T., Wilson, D., Wilson, R.K., Wing, R.A., Wolfner, M.F., Wong, A., Wong, G.K., Wu, C.I., Wu, G., Yamamoto, D., Yang, H.P., Yang, S.P., Yorke, J.A., Yoshida, K., Zdobnov, E., Zhang, P., Zhang, Y., Zimin, A.V., Baldwin, J., Abdouelleil, A., Abdulkadir, J., Abebe, A., Abera, B., Abreu, J., Acer, S.C., Aftuck, L., Alexander, A., An, P., Anderson, E., Anderson, S., Arachi, H., Azer, M., Bachantsang, P., Barry, A., Bayul, T., Berlin, A., Bessette, D., Bloom, T., Blye, J., Boguslavskiy, L., Bonnet, C., Boukhgalter, B., Bourzgui, I., Brown, A., Cahill, P., Channer, S., Cheshatsang, Y., Chuda, L., Citroen, M., Collymore, A., Cooke, P., Costello, M., D'Aco, K., Daza, R., De Haan, G., DeGray, S., DeMaso, C., Dhargay, N., Dooley, K., Dooley, E., Doricent, M., Dorje, P., Dorjee, K., Dupes, A., Elong, R., Falk, J., Farina, A., Faro, S., Ferguson, D., Fisher, S., Foley, C.D., Franke, A., Friedrich, D., Gadbois, L., Gearin, G., Gearin, C.R., Giannoukos, G., Goode, T., Graham, J., Grandbois, E., Grewal, S., Gyaltsen, K., Hafez, N., Hagos, B., Hall, J., Henson, C., Hollinger, A., Honan, T., Huard, M.D., Hughes, L., Hurhula, B., Husby, M.E., Kamat, A., Kanga, B., Kashin, S., Khazanovich, D., Kisner, P., Lance, K., Lara, M., Lee, W., Lennon, N., Letendre, F., LeVine, R., Lipovsky, A., Liu, X., Liu, J., Liu, S., Lokyitsang, T., Lokyitsang, Y., Lubonja, R., Lui, A., MacDonald, P., Magnisalis, V., Maru, K., Matthews, C., McCusker, W., McDonough, S., Mehta, T., Meldrim, J., Meneus, L., Mihai, O., Mihalev, A., Mihova, T., Mittelman, R., Mlenga, V., Montmayeur, A., Mulrain, L., Navidi, A., Naylor, J., Negash, T., Nguyen, T., Nguyen, N., Nicol, R., Norbu, C., Norbu, N., Novod, N., O'Neill, B., Osman, S., Markiewicz, E., Oyono, O.L., Patti, C., Phunkhang, P., Pierre, F., Priest, M., Raghuraman, S., Rege, F., Reyes, R., Rise, C., Rogov, P., Ross, K., Ryan, E., Settipalli, S., Shea, T., Sherpa, N., Shi, L., Shih, D., Sparrow, T., Spaulding, J., Stalker, J., Stange-Thomann, N., Stavropoulos, S., Stone, C., Strader, C., Tesfaye, S., Thomson, T., Thoulutsang, Y., Thoulutsang, D., Topham, K., Topping, I., Tsamla, T., Vassiliev, H., Vo, A., Wangchuk, T., Wangdi, T., Weiand, M., Wilkinson, J., Wilson, A., Yadav, S., Young, G., Yu, Q., Zembek, L., Zhong, D., Zimmer, A., Zwirko, Z., Jaffe, D.B., Alvarez, P., Brockman, W., Butler, J., Chin, C., Gnerre, S., Grabherr, M., Kleber, M., Mauceli, E., MacCallum, I. (2007). Evolution of genes and genomes on the Drosophila phylogeny. Nature 450(7167): 203--218. (Export to RIS)
FlyBase ID	FBrf0200326
Publication Type	Research paper
PubMed ID	17994087
PubMed Abstract	Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing more robust results than single-genome analyses can provide. The genomes of 12 Drosophila species, ten of which are presented here for the first time (sechellia, simulans, yakuba, erecta, ananassae, persimilis, willistoni, mojavensis, virilis and grimshawi), illustrate how rates and patterns of sequence divergence across taxa can illuminate evolutionary processes on a genomic scale. These genome sequences augment the formidable genetic tools that have made Drosophila melanogaster a pre-eminent model for animal genetics, and will further catalyse fundamental research on mechanisms of development, cell biology, genetics, disease, neurobiology, behaviour, physiology and evolution. Despite remarkable similarities among these Drosophila species, we identified many putatively non-neutral changes in protein-coding genes, non-coding RNA genes, and cis-regulatory regions. These may prove to underlie differences in the ecology and behaviour of these diverse species.
DOI	10.1038/nature06341
Related Publication(s)
Personal communication to FlyBase	Symbols and class of gene information for the GLEANR consensus sequences of the 11 sequenced non-melanogaster Drosophila species (Drosophila ananassae, erecta, grimshawi, mojavensis, persimilis, pseudoobscura, sechellia, simulans, willistoni, virilis and yakuba). Drosophila 12 Genomes Consortium, 2008, personal communication to FlyBase [FBrf0202436]
FlyBase analysis	Associations of D. pseudoobscura GLEANR gene predictions (Release 2.1) with previously known genes in FlyBase. FlyBase, 2008, Associations of D. pseudoobscura GLEANR gene predictions (Release 2.1) with previously known genes in FlyBase. [FBrf0202438] Newly sequenced Drosophila genomes: associations of GLEANR gene predictions (Releases 1.0) with previously known genes in FlyBase. FlyBase, 2008, Newly sequenced Drosophila genomes: associations of GLEANR gene predictions (Releases 1.0) with previously known genes in FlyBase. [FBrf0202439]
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Language of Publication	English
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Publication Type	Journal
Abbreviation	Nature
Title	Nature
Publication Year	1869-
ISBN/ISSN	0028-0836
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