Reference Report

Reference
Citation	Drosophila 12 Genomes Consortium, Clark, A.G., Eisen, M.B., Smith, D.R., Bergman, C.M., Oliver, B., Markow, T.A., Kaufman, T.C., Kellis, M., Gelbart, W., Iyer, V.N., Pollard, D.A., Sackton, T.B., Larracuente, A.M., Singh, N.D., Abad, J.P., Abt, D.N., Adryan, B., Aguade, M., Akashi, H., Anderson, W.W., Aquadro, C.F., Ardell, D.H., Arguello, R., Artieri, C.G., Barbash, D.A., Barker, D., Barsanti, P., Batterham, P., Batzoglou, S., Begun, D., Bhutkar, A., Blanco, E., Bosak, S.A., Bradley, R.K., Brand, A.D., Brent, M.R., Brooks, A.N., Brown, R.H., Butlin, R.K., Caggese, C., Calvi, B.R., Bernardo de Carvalho, A., Caspi, A., Castrezana, S., Celniker, S.E., Chang, J.L., Chapple, C., Chatterji, S., Chinwalla, A., Civetta, A., Clifton, S.W., Comeron, J.M., Costello, J.C., Coyne, J.A., Daub, J., David, R.G., Delcher, A.L., Delehaunty, K., Do, C.B., Ebling, H., Edwards, K., Eickbush, T., Evans, J.D., Filipski, A., Findeiss, S., Freyhult, E., Fulton, L., Fulton, R., Garcia, A.C., Gardiner, A., Garfield, D.A., Garvin, B.E., Gibson, G., Gilbert, D., Gnerre, S., Godfrey, J., Good, R., Gotea, V., Gravely, B., Greenberg, A.J., Griffiths-Jones, S., Gross, S., Guigo, R., Gustafson, E.A., Haerty, W., Hahn, M.W., Halligan, D.L., Halpern, A.L., Halter, G.M., Han, M.V., Heger, A., Hillier, L., Hinrichs, A.S., Holmes, I., Hoskins, R.A., Hubisz, M.J., Hultmark, D., Huntley, M.A., Jaffe, D.B., Jagadeeshan, S., Jeck, W.R., Johnson, J., Jones, C.D., Jordan, W.C., Karpen, G.H., Kataoka, E., Keightley, P.D., Kheradpour, P., Kirkness, E.F., Koerich, L.B., Kristiansen, K., Kudrna, D., Kulathinal, R.J., Kumar, S., Kwok, R., Lander, E., Langley, C.H., Lapoint, R., Lazzaro, B.P., Lee, S.J., Levesque, L., Li, R., Lin, C.F., Lin, M.F., Lindblad-Toh, K., Llopart, A., Long, M., Low, L., Lozovsky, E., Lu, J., Luo, M., Machado, C.A., Makalowski, W., Marzo, M., Matsuda, M., Matzkin, L., McAllister, B., McBride, C.S., McKernan, B., McKernan, K., Mendez-Lago, M., Minx, P., Mollenhauer, M.U., Montooth, K., Mount, S.M., Mu, X., Myers, E., Negre, B., Newfeld, S., Nielsen, R., Noor, M.A., O'Grady, P., Pachter, L., Papaceit, M., Parisi, M.J., Parisi, M., Parts, L., Pedersen, J.S., Pesole, G., Phillippy, A.M., Ponting, C.P., Pop, M., Porcelli, D., Powell, J.R., Prohaska, S., Pruitt, K., Puig, M., Quesneville, H., Ram, K.R., Rand, D., Rasmussen, M.D., Reed, L.K., Reenan, R., Reily, A., Remington, K.A., Rieger, T.T., Ritchie, M.G., Robin, C., Rogers, Y.H., Rohde, C., Rozas, J., Rubenfield, M.J., Ruiz, A., Russo, S., Salzberg, S.L., Sanchez-Gracia, A., Saranga, D.J., Sato, H., Schaeffer, S.W., Schatz, M.C., Schlenke, T., Schwartz, R., Segarra, C., Singh, R.S., Sirot, L., Sirota, M., Sisneros, N.B., Smith, C.D., Smith, T.F., Spieth, J., Stage, D.E., Stark, A., Stephan, W., Strausberg, R.L., Strempel, S., Sturgill, D., Sutton, G., Sutton, G.G., Tao, W., Teichmann, S., Tobari, Y.N., Tomimura, Y., Tsolas, J.M., Valente, V.L., Venter, E., Venter, J.C., Vicario, S., Vieira, F.G., Vilella, A.J., Villasante, A., Walenz, B., Wang, J., Wasserman, M., Watts, T., Wilson, D., Wilson, R.K., Wing, R.A., Wolfner, M.F., Wong, A., Wong, G.K., Wu, C.I., Wu, G., Yamamoto, D., Yang, H.P., Yang, S.P., Yorke, J.A., Yoshida, K., Zdobnov, E., Zhang, P., Zhang, Y., Zimin, A.V., Baldwin, J., Abdouelleil, A., Abdulkadir, J., Abebe, A., Abera, B., Abreu, J., Acer, S.C., Aftuck, L., Alexander, A., An, P., Anderson, E., Anderson, S., Arachi, H., Azer, M., Bachantsang, P., Barry, A., Bayul, T., Berlin, A., Bessette, D., Bloom, T., Blye, J., Boguslavskiy, L., Bonnet, C., Boukhgalter, B., Bourzgui, I., Brown, A., Cahill, P., Channer, S., Cheshatsang, Y., Chuda, L., Citroen, M., Collymore, A., Cooke, P., Costello, M., D'Aco, K., Daza, R., De Haan, G., DeGray, S., DeMaso, C., Dhargay, N., Dooley, K., Dooley, E., Doricent, M., Dorje, P., Dorjee, K., Dupes, A., Elong, R., Falk, J., Farina, A., Faro, S., Ferguson, D., Fisher, S., Foley, C.D., Franke, A., Friedrich, D., Gadbois, L., Gearin, G., Gearin, C.R., Giannoukos, G., Goode, T., Graham, J., Grandbois, E., Grewal, S., Gyaltsen, K., Hafez, N., Hagos, B., Hall, J., Henson, C., Hollinger, A., Honan, T., Huard, M.D., Hughes, L., Hurhula, B., Husby, M.E., Kamat, A., Kanga, B., Kashin, S., Khazanovich, D., Kisner, P., Lance, K., Lara, M., Lee, W., Lennon, N., Letendre, F., LeVine, R., Lipovsky, A., Liu, X., Liu, J., Liu, S., Lokyitsang, T., Lokyitsang, Y., Lubonja, R., Lui, A., MacDonald, P., Magnisalis, V., Maru, K., Matthews, C., McCusker, W., McDonough, S., Mehta, T., Meldrim, J., Meneus, L., Mihai, O., Mihalev, A., Mihova, T., Mittelman, R., Mlenga, V., Montmayeur, A., Mulrain, L., Navidi, A., Naylor, J., Negash, T., Nguyen, T., Nguyen, N., Nicol, R., Norbu, C., Norbu, N., Novod, N., O'Neill, B., Osman, S., Markiewicz, E., Oyono, O.L., Patti, C., Phunkhang, P., Pierre, F., Priest, M., Raghuraman, S., Rege, F., Reyes, R., Rise, C., Rogov, P., Ross, K., Ryan, E., Settipalli, S., Shea, T., Sherpa, N., Shi, L., Shih, D., Sparrow, T., Spaulding, J., Stalker, J., Stange-Thomann, N., Stavropoulos, S., Stone, C., Strader, C., Tesfaye, S., Thomson, T., Thoulutsang, Y., Thoulutsang, D., Topham, K., Topping, I., Tsamla, T., Vassiliev, H., Vo, A., Wangchuk, T., Wangdi, T., Weiand, M., Wilkinson, J., Wilson, A., Yadav, S., Young, G., Yu, Q., Zembek, L., Zhong, D., Zimmer, A., Zwirko, Z., Jaffe, D.B., Alvarez, P., Brockman, W., Butler, J., Chin, C., Gnerre, S., Grabherr, M., Kleber, M., Mauceli, E., MacCallum, I. (2007). Evolution of genes and genomes on the Drosophila phylogeny. Nature 450(7167): 203--218. (Export to RIS)
FlyBase ID	FBrf0200326
Publication Type	Research paper
External Crossreferences
PubMed ID	17994087
PubMed Abstract	Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing more robust results than single-genome analyses can provide. The genomes of 12 Drosophila species, ten of which are presented here for the first time (sechellia, simulans, yakuba, erecta, ananassae, persimilis, willistoni, mojavensis, virilis and grimshawi), illustrate how rates and patterns of sequence divergence across taxa can illuminate evolutionary processes on a genomic scale. These genome sequences augment the formidable genetic tools that have made Drosophila melanogaster a pre-eminent model for animal genetics, and will further catalyse fundamental research on mechanisms of development, cell biology, genetics, disease, neurobiology, behaviour, physiology and evolution. Despite remarkable similarities among these Drosophila species, we identified many putatively non-neutral changes in protein-coding genes, non-coding RNA genes, and cis-regulatory regions. These may prove to underlie differences in the ecology and behaviour of these diverse species.
BIOSIS ID	2008.65644
Zoological Record ID
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FB2011_10	Genes Dpse\GA30233 Dpse\Tm1 Dpse\GA30229 Dpse\GA30237 Dsec\Obp99a Dpse\GA30228 Dpse\GA30230 Dpse\GA30239 Dpse\GA30238 Dpse\GA30153 Dyak\Obp56f Dpse\GA11311 Dpse\GA30231 Dsec\Obp99b
FB2012_01	Genes Dsim\Obp57d Dsim\Obp83cd Dere\Obp57d Dpse\GA30251 Dere\Obp57e
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Associated Information
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Text of Personal Communication
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Related Publications
Personal communication to FlyBase	Symbols and class of gene information for the GLEANR consensus sequences of the 11 sequenced non-melanogaster Drosophila species (Drosophila ananassae, erecta, grimshawi, mojavensis, persimilis, pseudoobscura, sechellia, simulans, willistoni, virilis and yakuba). Drosophila 12 Genomes Consortium, 2008, personal communication to FlyBase [FBrf0202436]
FlyBase analysis	Associations of D. pseudoobscura GLEANR gene predictions (Release 2.1) with previously known genes in FlyBase. FlyBase, 2008, Associations of D. pseudoobscura GLEANR gene predictions (Release 2.1) with previously known genes in FlyBase. [FBrf0202438] Newly sequenced Drosophila genomes: associations of GLEANR gene predictions (Releases 1.0) with previously known genes in FlyBase. FlyBase, 2008, Newly sequenced Drosophila genomes: associations of GLEANR gene predictions (Releases 1.0) with previously known genes in FlyBase. [FBrf0202439]
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Secondary IDs
Language of Publication	English
Additional Languages of Abstract
ISBN
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Publication Type	Journal
Abbreviation	Nature
Title	Nature
Editors
Publication Year	1869-
ISBN/ISSN	0028-0836
Data from Reference
Genes (174008)
	All Genes relating to this reference