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Reference Report
| Reference | |||
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| Citation | FlyBase (2008). Newly sequenced Drosophila genomes: associations of GLEANR gene predictions (Releases 1.0) with previously known genes in FlyBase. (Export to RIS) | ||
| FlyBase ID | FBrf0202439 | ||
| Publication Type | FlyBase analysis | ||
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| PubMed Abstract | |||
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| Related Publication(s) | |||
| Research paper | Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium et al., 2007, Nature 450(7167): 203--218 [FBrf0200326] |
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| Description |
What does this section display?
This section contains items that were added to this record for each release.
It currently only tracks new links between this FlyBase report and other
FlyBase data classes (e.g. genes, references, stocks) or controlled
vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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| FB2013_03 | |||
| FB2013_02 | |||
| All updates | Click here to see a list of all updates to this record from FB2010_08 and on. | ||
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Associated Information
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| Comments |
Associations with GLEANR gene prediction models (which comprise the Release 1.0 annotation sets) were determined for previously
described genes for which nucleotide or protein GenBank accessions are available. A tBLASTn (for cases with protein sequence
data) or a BLASTn (for cases with only nucleotide sequence data) alignment was done to identify the correct region of the
genome and any corresponding GLEANR prediction in that region.
The numbers of such associations made for each of the newly sequenced species are indicated below. (Analysis for D. pseudoobscura is described in a separate communication.) D. ananassae 51 D. erecta 192 D. grimshawi 26 D. mojavensis 46 D. persimilis 29 D. sechellia 101 D. simulans 501 D. virilis 214 D. willistoni 57 D. yakuba 864 Detailed comparisons were beyond the scope of this analysis, but major discrepancies (such as incomplete annotations or annotations that need to be merged) or atypical cases (such as unresolved dicistronics) were noted. No changes were made to the GLEANR gene prediction models. |
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Other Information
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| Language of Publication | English | ||
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Data from Reference
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| Genes (2127)
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