Open Close
Reference
Citation
FlyBase (2008). Newly sequenced Drosophila genomes: associations of GLEANR gene predictions (Releases 1.0) with previously known genes in FlyBase. 
FlyBase ID
FBrf0202439
Publication Type
FlyBase analysis
Abstract
PubMed ID
PubMed Central ID
DOI
Related Publication(s)
Research paper

Evolution of genes and genomes on the Drosophila phylogeny.
Drosophila 12 Genomes Consortium et al., 2007, Nature 450(7167): 203--218 [FBrf0200326]

Associated Information
Comments

Associations with GLEANR gene prediction models (which comprise the Release 1.0 annotation sets) were determined for previously described genes for which nucleotide or protein GenBank accessions are available. A tBLASTn (for cases with protein sequence data) or a BLASTn (for cases with only nucleotide sequence data) alignment was done to identify the correct region of the genome and any corresponding GLEANR prediction in that region.

The numbers of such associations made for each of the newly sequenced species are indicated below. (Analysis for D. pseudoobscura is described in a separate communication.)

D. ananassae 51

D. erecta 192

D. grimshawi 26

D. mojavensis 46

D. persimilis 29

D. sechellia 101

D. simulans 501

D. virilis 214

D. willistoni 57

D. yakuba 864

Detailed comparisons were beyond the scope of this analysis, but major discrepancies (such as incomplete annotations or annotations that need to be merged) or atypical cases (such as unresolved dicistronics) were noted. No changes were made to the GLEANR gene prediction models.

Associated Files
Other Information
Secondary IDs
    Language of Publication
    English
    Additional Languages of Abstract
    Parent Publication
    Publication Type
    Abbreviation
    Title
    ISBN/ISSN
    Data From Reference
    Genes (2125)
    List limited to the first 200 records. Use the HitList export button in the left sidebar to view all records.