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Popodi, E., Kaufman, T.C., Holtzman, S.L., Park, S., Carlson, J.W., Hoskins, R.A., Schulze, K.L., Venken, K.J.T., Bellen, H.J. (2010-). Small X duplications for the stock center collection. 
FlyBase ID
FBrf0210621
Publication Type
Personal communication to FlyBase
Abstract
PubMed ID
PubMed Central ID
Text of Personal Communication
The "DC" small X duplications at the Bloomington Stock Center are from a project aimed at producing 80-100 kb duplications of the X chromosome using the Pacman system.  This is a joint project of the Bellen, Hoskins and Kaufman labs.
The excel spreadsheets listed in the "Associated Files" section of the Reference Report list details for each duplication.  Below is some general information that is not provided in the spreadsheets.
There are two progenitors for each duplication - the docking site and the BAC clone:
The docking site used is listed in the spreadsheet as an abbreviation - VK33 and is common to all but one of the duplications, DC005 was inserted into VK37.  The full names of the docking sites are:
PBac{y+-attP-3B}VK00033 ; FBti0076453
And for DC005 PBac{y+-attP-3B}VK00037 - FBti0076455
The reference associated with the docking sites is Venken et al., 2006 Science  314:1747--1751  (FBrf0194996).
The second progenitor is the individual BAC used to generate each insertion, these are listed in the BAC name column and unlike the VK33 site are different for each stock. The reference for these is Venken et al., 2009 Nature Methods  6:431 ; FBrf0209231. The BAC sequences can be obtained from the Pacman web site, by entering the BAC name at the end of the URL below:
http://torso.lbl.gov/cgi-bin/gbrowse/getbac/?name=
For example, the link for BAC CH321-32O15 is:
http://torso.lbl.gov/cgi-bin/gbrowse/getbac/?name=CH321-32O15
Three of the duplications were published in Venken et al., 2009 Nature Methods (same as above). The synonyms and reference are provided in the relevant table.
The publication for this collection is :
Koen J. T. Venken, Ellen Popodi, Stacy L. Holtzman, Karen L. Schulze, Soo Park, Joseph W. Carlson, Roger A. Hoskins, Hugo J. Bellen, and Thomas C. Kaufman.  "A Molecularly Defined Duplication Set for the X Chromosome of Drosophila melanogaster"
DOI
Related Publication(s)
Research paper
A molecularly defined duplication set for the X chromosome of Drosophila melanogaster.
Venken et al., 2010, Genetics 186(4): 1111--1125 [FBrf0212670]
Personal communication to FlyBase
Additional rescue information for Dp(1;3)DC304.
Popodi, 2010.7.15, Additional rescue information for Dp(1;3)DC304. [FBrf0211304]
Additional Phenotypic data in combination with other aberrations for Dp(1;3)DC273, Dp(1;3)DC243 and Dp(1;3)DC134.
Popodi, 2010.7.15, Additional Phenotypic data in combination with other aberrations for Dp(1;3)DC273, Dp(1;3)DC243 and Dp(1;3)DC134. [FBrf0211305]
Additional data for selected DC Duplications.
Popodi, 2010.10.8, Additional data for selected DC Duplications. [FBrf0212038]
Associated Information
Comments
Associated Files
File date: 2010.3.26 ; File size: 182272 ; File format: xls ; File name: FlyBase_submission_260310.xls
File date: 2010.5.10 ; File size: 62976 ; File format: xls ; File name: FlyBase_submission_210510.xls
File date: 2010.7.14 ; File size: 54784 ; File format: xls ; File name: FlyBase_submission_140710.xls
File date: 2010.10.21 ; File size: 72192 ; File format: xls ; File name: FlyBase_submission_211010.xls
File date: 2011.1.20 ; File size: 44032 ; File format: xls ; File name: FlyBase_submission_200111.xls
Other Information
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    Language of Publication
    English
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    Data From Reference
    Aberrations (421)
    List limited to the first 200 records. Use the HitList export button in the left sidebar to view all records.
    Alleles (277)
    List limited to the first 200 records. Use the HitList export button in the left sidebar to view all records.
    Genes (153)
    Datasets (1)
    Molecular Constructs (1)
    Natural transposons (1)
    Insertions (421)
    List limited to the first 200 records. Use the HitList export button in the left sidebar to view all records.
    Transgenic Constructs (419)
    List limited to the first 200 records. Use the HitList export button in the left sidebar to view all records.