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Reference Report
| Reference | |||
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| Citation | FlyBase Genome Annotators, (2011). Analysis of novel conserved protein-coding genes from the modENCODE consortium. (Export to RIS) | ||
| FlyBase ID | FBrf0212860 | ||
| Publication Type | FlyBase analysis | ||
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| PubMed Abstract | |||
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| Related Publication(s) | |||
| Research paper | Identification of functional elements and regulatory circuits by Drosophila modENCODE. modENCODE Consortium et al., 2010, Science 330(6012): 1787--1797 [FBrf0212741] |
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| Supplementary material | DataS2: Novel transcripts with complete or incomplete conserved ORFs. [FBrf0212861] |
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| Description |
What does this section display?
This section contains items that were added to this record for each release.
It currently only tracks new links between this FlyBase report and other
FlyBase data classes (e.g. genes, references, stocks) or controlled
vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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| FB2013_03 | |||
| FB2013_02 | |||
| All updates | Click here to see a list of all updates to this record from FB2010_08 and on. | ||
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Associated Information
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| Comments |
All entries in Supplementary Dataset S2 from the integrative modENCODE analysis of the Drosophila genome (FBrf0212741) were assessed; after elimination of duplicates, there are 136, 55 indicated as "CompleteORF" and 81 indicated as "IncompleteORF".
(In FBrf0212741, it is stated that there are 138 conserved protein-coding genes predicted; the discrepancy appears to be due to 3 independent
entries that correspond to CG43051.) 63 of the predictions were annotated previously in FlyBase, including 4 pseudogenes;
39 were created as new gene models (r5.34), including 6 new pseudogenes, for a total of 102 gene models. All 55 predictions
identified as "CompleteORF" correspond to gene models; 3 of these are pseudogenes. Most of the 34 predictions that FlyBase
rejected correspond to fragments of transposable elements (27); there are also a number of mitochondrial fragments (4). A
file with assessment data for each entry, including the release during which the gene model was added, is available from the
FlyBase ftp site.
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| Associated Files | File date: 2011.1.26 ; File size: 40960 ; File format: xls ; File name: FlyBase_Analysis_modENCODE_coding_genes_260111.xls | ||
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Other Information
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| Secondary IDs | |||
| Language of Publication | English | ||
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Data from Reference
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| Genes (100)
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