Reference Report

Reference
Citation	Graveley, B. (2011.11.3). Total entropy scores for the 67,317 modENCODE junctions. (Export to RIS)
FlyBase ID	FBrf0216691
Publication Type	Personal communication to FlyBase
PubMed ID
PubMed Abstract
Text of Personal Communication	Attached is a text document which contains the read count and entropy scores for all 67,317 junctions in each of the 30 developmental samples. This file has two extra columns, one for the total number of reads in all samples and the other for the entropy score using all reads in all samples. The samples are labeled in the table using BS numbers which have the following translations: BS40 embryos0-2hr BS43 embryos2-4hr BS46 embryos4-6hr BS49 embryos6-8hr BS54 embryos8-10hr BS55 embryos10-12hr BS58 embryos12-14hr BS62 embryos14-16hr BS66 embryos16-18hr BS67 embryos18-20hr BS71 embryos20-22hr BS73 embryos22-24hr BS107 L1larvae BS111 L2larvae BS113 L3larvae_12hr_post_molt BS196 L3larvaePS_1-2 BS200 L3larvaePS_3-6 BS203 L3larvaePS_7-9 BS129 white_prepupae BS133 WPP_12hr BS136 WPP_24hr BS137 pupae_WPP_2d BS140 pupae_WPP_3d BS143 pupae_WPP_4d BS150 adult_male_1d BS156 adult_male_5d BS162 adult_male_30d BS153 adult_female_1d BS159 adult_female_5d BS165 adult_female_30d Cheers, Brenton R Graveley UConn Health Center
DOI
Related Publication(s)
Research paper	The developmental transcriptome of Drosophila melanogaster. Graveley et al., 2011, Nature 471(7339): 473--479 [FBrf0213330]
Personal communication to FlyBase	Additional low confidence modENCODE junctions. Graveley, 2011.11.3, Additional low confidence modENCODE junctions. [FBrf0217580] modENCODE RNA-Seq junction data Graveley, 2011.1.5, modENCODE RNA-Seq junction data [FBrf0212682]
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Comments
Associated Files	File date: 2011.11.3 ; File size: 25618387 ; File format: txt ; File name: Graveley.2011.11.3-Junctions_for_FlyBase_with_total_entropy_scores.txt
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Language of Publication	English
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