FB2022_03, released June 9, 2022

Reference Report

Open Close
Reference
Citation
Halfon, M.S., FlyBase Curators, (2012-). REDfly as the main source for regulatory region annotations in FlyBase.  ( Link 1 )
FlyBase ID
FBrf0218775
Publication Type
Personal communication to FlyBase
Abstract
PubMed ID
PubMed Central ID
Text of Personal Communication 
REDfly cis-regulatory modules (CRMs) are imported into FlyBase as "regulatory_region" features. With each update, new features are added, coordinates for existing features are updated as necessary, and features no longer at REDfly are deleted from FlyBase. For each CRM, the coordinates, associated gene, publications, REDfly synonym and REDfly ID are obtained. These CRMs are grouped under the FlyBase dataset "REDfly CRMs", and shown in the "Regulatory Region" track. The majority of "regulatory_region" features in FlyBase are derived from REDfly (all but 272 of them).
--------------------------------------------------------------------------------
Update 1: 2012.6.19. 1,828 CRMs (regulatory regions) added to FlyBase.
--------------------------------------------------------------------------------
Update 2: 2018.1.9. REDfly v5.4.1. 542 CRMs (regulatory regions) were added, coordinates were corrected for 11 CRMs, and 61 CRMs were deleted in FlyBase. This update was limited to CRMs identified in vivo (not in cell culture), and excluded regions from Kvon et al., 2014 (FBrf0225840), which have already been curated as part of the VDRC-VT GAL4 driver reagent collection (FBlc0000718). With this update, there are now 2,308 REDfly CRMs in FlyBase.
--------------------------------------------------------------------------------
DOI
Related Publication(s)
Research paper

REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila.
Gallo et al., 2011, Nucleic Acids Res. 39(Database issue): D118--D123 [FBrf0212654]

Associated Information
Comments
Associated Files
Other Information
Secondary IDs
    Language of Publication
    English
    Additional Languages of Abstract
    Parent Publication
    Publication Type
    Abbreviation
    Title
    ISBN/ISSN
    Data From Reference
    Datasets (0)
      Sequence Features (24753)
      List limited to the first 200 records. Use the HitList export button in the left sidebar to view all records.
      Transgenic Constructs (2047)
      List limited to the first 200 records. Use the HitList export button in the left sidebar to view all records.