A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Sequence Feature: RNAi_reagent

General Information
Symbol dsRNA-GD6943 Species D. melanogaster
Feature type RNAi_reagent FlyBase ID FBsf0000076373
Collection VDRC-1   Associated gene(s) TBPH
Genomic Location
Chromosome (arm) 2R Sequence location 2R:19,748,365..19,748,665 [-]
Map ( GBrowse ) GBrowse View Help detailed view FBtr0301644 FBtr0089625 FBtr0089624 FBtr0089627 FBtr0089626 FBtr0301643 FBtr0072227 FBsf0000025601 FBsf0000004495 FBsf0000028358 FBsf0000028359 FBsf0000029017 FBsf0000091480 FBsf0000076373 FBsf0000437355 FBsf0000096197 FBsf0000406641 FBsf0000387569
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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hide Sequence Data
Length 301
Comments
One copy of repeat shown
(Dietzl et al., 2007)
Sequence 
GAACAAGCGCAAGAGCGACGATAACTTGGAGAACTCAACTGCCAAGACCA
AACGCATCGAGACCCGTCTGCGCTGCACTGATCTCATCGTGCTCGGCTTG
CCGTGGAAGACCACAGAGGAGAGCTTGCGTGAGTACTTCGAGACCTACGG
CGAGGTGCTGATGGCCCAGATCAAGAAGGACACCAAGTCGGGCCAGTCCA
AGGGCTTCGGTTTCGTGCGCTTCGGCTCTTACGATGCCCAGATGCGCGTG
CTCACCAATCGCCATCTGATCGACGGTCGCTGGTGCGAGGTTAAGGTGCC
C
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Gene(s)
(targeted or local)
Allele(s)
Transcripts(s)
Polypeptide(s)
Construct
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PCR template
genomic DNA
(Dietzl et al., 2007)
Primer 1
GAACAAGCGCAAGAGCGACGA
(Dietzl et al., 2007)
Primer 2
GGGCACCTTAACCTCGCACCA
(Dietzl et al., 2007)
Comments
hide Collection Information
hide Collection: VDRC-1
Symbol VDRC-1
Source and Progenitors
Species of derivation D. melanogaster  
Strain of derivation
Vector or progenitor construct
Description
Comprehensive collection of stocks carrying UAS-RNAi transgenes, each designed to target a single protein-coding gene.
(Dietzl et al., 2007)
Additional data
A collection of over 13,200 RNAi transgenes (over 22,200 lines), each designed to target a single protein-coding gene; each construct contains short gene fragments cloned as inverted repeats that are expressed using the binary GAL4/UAS system. It is estimated that 88% of predicted protein-coding genes are targeted.
(Dietzl et al., 2007)
Cell lines
Observed in
Not observed in
hide Comments
hide Stocks Listed in FlyBase ( 2 )
VDRC
v38377
w1118; P{GD6943}v38377
v38379
w1118; P{GD6943}v38379
hide External Crossreferences & Linkouts
hide Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym
6943
(Dietzl et al., 2007)
dsRNA-GD6943
 
Secondary FlyBase IDs
  • FBri0073680
hide References ( 1 )
Supplementary material
Dietzl et al., 2007, Nature 448(7150):
Supplementary Table 1. [FBrf0202579]