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General Information
Symbol
Dmel\dsRNA-GD9504
Species
D. melanogaster
Feature type
FlyBase ID
FBsf0000078385
Collection
Associated gene
Genomic Location
Chromosome (arm)
3R
Sequence location

3R:29,856,944..29,857,274 [-]

Sequence Data
Length
331
Comments

One copy of repeat shown

TGCGCCAATCCCACCTACGAGTGCAGCCTGATGCGGATCGAGGGCTACGAGTATTGCATCCGACACATCCTGCGCGACCC
GCGCTCCAACTTCCGACAGTGCTCGCACGTCTACTCGAACGGCAGGAAGTGCATCAACGCGGTGGCCAAGTATGACAACA
AGAAGGAGCTGATCCTGACGACCCTCTGCTTCGAGCACAACCGGCAGACGCAGCTGCAGAAGACGCACATGAATGTGGGC
CGCATTCGCAGCCGGGTGGAGACCAACGAGACCCTGCTGCACAGCCTCTCATCGCACATTAATGTGGAGGACATAAAGCC
AGAGGTGAAAA
Associated Information
Gene(s) (targeted or local)
Allele(s)
Transcripts(s)
    Polypeptide(s)
      Construct
      Experimental Data
      Progenitors
      PCR template

      genomic DNA

      Primer 1
      TGCGCCAATCCCACCTACGA
      
      Primer 2
      TTTTCACCTCTGGCTTTATGTCCTCCA
      
      Comments
      Collection Information
      Collection: VDRC-GD
      Symbol
      Title
      A set of transgenic RNAi constructs for expression of dsRNA under UAS control, VDRC first generation.
      Source and Progenitors
      Species of derivation
      D. melanogaster
      Strain of derivation
      Vector of progenitor construct
      Description

      Comprehensive collection of stocks carrying UAS-RNAi transgenes, each designed to target a single protein-coding gene.

      NOTE: Dataset members correspond to the amplicon sequence features; these can be used to retrieve associated constructs and stocks.

      Additional data
      Sample preparation
      Collection preparation

      A collection of over 13,200 RNAi transgenes (over 22,200 lines), each designed to target a single protein-coding gene; each construct contains short gene fragments cloned as inverted repeats that are expressed using the binary GAL4/UAS system. It is estimated that 88% of predicted protein-coding genes are targeted.

      Mode of assay
      Data analysis

      A specificity score (Q) was calculated for each construct, such that if Q is < 0.5, off-target effects are probable and if Q > 0.8, off-target effects are improbable.

      Cell lines
      Observed in
      Not observed in
      Comments
      Stocks (1)
      External Crossreferences and Linkouts ( 0 )
      Synonyms and Secondary IDs (2)
      Reported As
      Symbol Synonym
      dsRNA-GD9504
      Secondary FlyBase IDs
      • FBri0075980
      References (1)