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Sequence Feature: exon_junction
| General Information | |||
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| Symbol | Dmel:r5:3R:2304146:2304485:+ | Species | D. melanogaster |
| Feature type | exon_junction | FlyBase ID | FBsf0000177137 |
| Collection | modENCODE_mRNA-Seq_U_junctions | Associated gene(s) | CG15186 |
| Genomic Location | |||
| Chromosome (arm) | 3R | Sequence location | 3R:2,304,146..2,304,485 [+] |
Map ( GBrowse )
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Recent Updates
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| Description |
What does this section display?
This section contains items that were added to this record for each release.
It currently only tracks new links between this FlyBase report and other
FlyBase data classes (e.g. genes, references, stocks) or controlled
vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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| FB2013_03 | |||
| FB2013_02 | |||
| All updates | Click here to see a list of all updates to this record from FB2010_08 and on. | ||
Sequence Data
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| Length | |||
| Comments |
GT..AG
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| Sequence | |||
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Associated Information
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| Gene(s) (targeted or local) |
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| Allele(s) |
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| Transcripts(s) |
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| Polypeptide(s) |
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| Construct |
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Experimental Data
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RNA-Seq Read Counts
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Library: modENCODE_mRNA-Seq_U_junctions
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Expression stage(s)
Read Count
0
0
0
0
0
0
0
embryonic stage 16
Comment:14-16 hr
1
embryonic stage 17(i)
Comment:16-18 hr
1
embryonic stage 17(ii)
Comment:18-20 hr
3
embryonic stage 17(iii)
Comment:20-22 hr
3
embryonic stage 17(iv)
Comment:22-24 hr
6
early third instar larval stage
Comment:12 hr post-molt
0
third instar - uncleared gut stage
Comment:indicated as puff stage 1-2
1
third instar - partially cleared gut stage
Comment:indicated as puff stage 3-6
2
third instar - cleared gut stage
Comment:indicated as puff stage 7-9
8
pupal stage P5
Comment:aged 12 hrs after collection as white prepupae
11
pupal stage P6
Comment:aged 24 hrs after collection as white prepupae
13
pharate adult stage P8
Comment:aged 2 days after collection as white prepupae
4
4
pharate adult stage P15
Comment:aged 4 days after collection as white prepupae
0
0
2
0
0
1
0
Total
71
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Progenitors
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| PCR template | |||
| Primer 1 | |||
| Primer 2 | |||
| Comments | |||
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Collection Information
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Collection: modENCODE_mRNA-Seq_U_junctions
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| Symbol | modENCODE_mRNA-Seq_U_junctions | ||
| Source and Progenitors | |||
| Species of derivation | D. melanogaster | ||
| Strain of derivation | |||
| Vector or progenitor construct | |||
| Description | |||
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Umbrella record for 30 collections that differ by developmental stage, from 0-2-hr embryos to 30-day adults. Consists of 76-nt
single-end and paired-end reads; RNA junctions identified and characterized (presented in GBrowse and in RNA junction reports).
Restricted to uniquely aligned reads.
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| Additional data | |||
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See report for modENCODE_mRNA-Seq_U.
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| Cell lines | |||
| Observed in | |||
| Not observed in | |||
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Comments
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Matches FlyBase Annotated Junction.
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Stocks Listed in FlyBase
( 0 )
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External Crossreferences & Linkouts
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Synonyms & Secondary IDs
( 2 )
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| Reported As | |||
| Symbol Synonym |
chr3R_2304147_2304484
Dmel:r5:3R:2304146:2304485:+
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| Secondary FlyBase IDs | |||
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References
( 3 )
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| Personal communication to FlyBase |
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| FlyBase analysis |
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