A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Sequence Feature: RNAi_reagent

General Information
Symbol HFA03840 Species D. melanogaster
Feature type RNAi_reagent FlyBase ID FBsf0000386922
Collection HFA   Associated gene(s) CG34115
Genomic Location
Chromosome (arm) 2R Sequence location 2R:16,863,099..16,864,343 [+]
Map ( GBrowse ) GBrowse View Help detailed view FBtr0071555 FBtr0300563 FBtr0110813 FBtr0071520 FBtr0071554 FBsf0000004075 FBsf0000003699 FBsf0000034747 FBsf0000004376 FBsf0000004076 FBsf0000094652 FBsf0000082234 FBsf0000090652 FBsf0000075546 FBsf0000410987 FBsf0000412612 FBsf0000413923 FBsf0000407207 FBsf0000405421 FBsf0000387165 FBsf0000386922 FBsf0000387459 FBsf0000387166
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Description
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This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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hide Sequence Data
Length 1245
Comments
Sequence 
ATGGCTAAATTGAGTGCCCTGCTGCTGCCCGTAAGTTTCAGATAGTTAAA
TTTGGTTTCTAGAGTGTACCTGCCAAATTAACACCTTGTGGGGGGAGCCC
ACAAGTCCACTGACACAATTTCCGCCTTTTCTGCGCGAAAGTCGCACCCA
AAAAGAAAACCGTCTGCATTGCTCGGAAATAGTGACTTGAATTTCCAATG
AGCCCGCGTCAGTTCTTCTTTCAAAATCCATTTGTTTTTAGTTTTTTCGT
TTCTCCTTTTTGGCGGCCAGACAATTGACACATTTTCGAATCATATGTGG
GCCAAATTCGAAGGCTCTCTCTGGCCATGGGAATGGGGAGACCTTGAATG
ACACGATCTGGCTCTCTTCCGCGCTCTCTTTTGGCCAAATTGAACGCCAA
GCGAAATGTGTCATAATCTCCGGGCAACGAGTTGTGGCCAAGTTGCGCAT
CGTGGCTTTTATTGTTGGTGTAATTGCATAACCGGCGTCAACAAACCGTT
GCTTTCAAGTTGACTCAAAAGCCTGAAAGCGATTTCTTGGCCGTCGTCGC
ACTCGCATTTATTACCACTTTCGTGCAGCTGACACAGTGAGCCATTGAGC
ATAAATGTGATATCTAACTTCCCCCTAAATCTAGTTTAGCCAATTCAATT
AGCTTTCACATAGATGTGGTTTTTTGTTAGAAAACGAATTAAAATCGTAC
TTTTACTTACAGCACGACCCTGCTTTTAATTGCTGCAATCGTAATAAAAT
TAGATTGGATATCTAAAATTTTTAAATCATTTGGTTAATAATAATAATTT
ACTTCTTAACTTCAAATAAATTTACTCAAATAAATTACGATAAGTTTGAA
TCCTAACATTATGAGAACTATTTCTAATATTAATTTCACGCCAATAGATG
GAGCTTAGAAAAATGACAAAAATTGAATTTTTAACTTTACCCAATTGACT
TTTTAACAAACCAATATTTAATGTTTATTAACCACTTTCTTTACTTTCCA
GCTAATTTTGTTTATTGTGGCCTTTGTGGCGCACACAACTTTTGCTACAG
TGCAGCCAAAAGCACCGAACTTCCAGTACTTCGAAAGGTATGCAATTGTC
AATTTAAACTATATTAAATTGAATTTATATAACAATATATTTCAGGCCCA
AGTACCGTTATCCCTACTACGATGAACACGGGCGCGGAAAACTTCTCTAC
GGCTACGGCGGACCGGAATTGTACCAATACAAGACCTACACGCCC
hide Associated Information
Gene(s)
(targeted or local)
Allele(s)
Transcripts(s)
Polypeptide(s)
Construct
hide Experimental Data
hide Progenitors
PCR template
genomic
(Horn et al., 2011.11.16)
Primer 1
ATGGCTAAATTGAGTGCCCT
(Horn et al., 2011.11.16)
Primer 2
GGGCGTGTAGGTCTTGTATT
(Horn et al., 2011.11.16)
Comments
hide Collection Information
hide Collection: HFAHFA
Symbol HFAHFA
Source and Progenitors
Species of derivation D. melanogaster  
Strain of derivation
Vector or progenitor construct
Description
Collection of double-strand RNA fragments, used for genome-wide RNAi-knockdown assays in cell culture. RNAi targeting of transcripts annotated by the Berkeley Drosophila Genome Project and additionally predicted gene models.
 
Additional data
Cell lines
Observed in
Not observed in
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hide Stocks Listed in FlyBase ( 0 )
hide External Crossreferences & Linkouts
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
•
hide Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym
HFA03840
(Horn et al., 2011.11.16)
Secondary FlyBase IDs
    hide References ( 1 )
    Personal communication to FlyBase
    Horn et al., 2011.11.16, GenomeRNAi reagent in FlyBase
    GenomeRNAi reagent in FlyBase [FBrf0216883]