A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Sequence Feature: RNAi_reagent

General Information
Symbol HFA15373 Species D. melanogaster
Feature type RNAi_reagent FlyBase ID FBsf0000394482
Collection HFA   Associated gene(s) CG18682
Genomic Location
Chromosome (arm) 3R Sequence location 3R:25,948,060..25,948,451 [-]
Map ( GBrowse ) GBrowse View Help detailed view FBtr0085565 FBtr0114597 FBtr0334710 FBtr0302312 FBtr0085588 FBsf0000026355 FBsf0000031592 FBsf0000014863 FBsf0000014864 FBsf0000088646 FBsf0000086282 FBsf0000403468 FBsf0000394482 FBsf0000394483 FBsf0000431191
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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hide Sequence Data
Length 392
Comments
Sequence
CTGCGGACTCGTGGTGGCCGGTGGAGTCCTGGTGGGTCACCTCATTCGGA
GTTTGGGACTGGAGGCCATCACTGGAGATGATCAACATCCAATTTTCGGT
AATTCTTCTACGCATAAACCGAAGTCTTCGGAGGAAGAGGGTTCGTCCTC
TACGCCAGCACCTAAAAATTCTACAAATGCCACGGCAAGGGGACTTTTTG
ATGATAACTTAAGTTTTCCTGGAATCCTTGACAACTTTAAGCTGATTTAC
CGCAATGAAACTGGAGATCGGGTGGGTATGTTTAGCTAACGAATCTCATT
CGGGAAGCAATCCTAATTTTATTATTTTTTATTAGCTACCAATCTTCCTA
ACATTCTCGGTATGATTGAGCGCACCTTTCTCAAAAACGACG
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Gene(s)
(targeted or local)
Allele(s)
Transcripts(s)
Polypeptide(s)
Construct
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hide Progenitors
PCR template
Primer 1
CTGCGGACTCGTGGTG
Primer 2
CGTCGTTTTTGAGAAAGGTG
Comments
hide Collection Information
hide Collection: HFAHFA
Symbol HFAHFA
Source and Progenitors
Species of derivation D. melanogaster  
Strain of derivation
Vector or progenitor construct
Description
Collection of double-strand RNA fragments, used for genome-wide RNAi-knockdown assays in cell culture. RNAi targeting of transcripts annotated by the Berkeley Drosophila Genome Project and additionally predicted gene models.
 
Additional data
Cell lines
Observed in
Not observed in
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hide Stocks Listed in FlyBase ( 0 )
hide External Crossreferences & Linkouts
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym
Secondary FlyBase IDs
    hide References ( 1 )
    Personal communication to FlyBase
    Horn et al., 2011.11.16, GenomeRNAi reagent in FlyBase
    GenomeRNAi reagent in FlyBase [FBrf0216883]