A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Sequence Feature: RNAi_reagent

General Information
Symbol BKN28039 Species D. melanogaster
Feature type RNAi_reagent FlyBase ID FBsf0000406340
Collection HD2   Associated gene(s) Syx16
Genomic Location
Chromosome (arm) X Sequence location X:20,263,687..20,263,965 [-]
Map ( GBrowse ) GBrowse View Help detailed view FBtr0302241 FBtr0077298 FBtr0077330 FBtr0301344 FBsf0000019913 FBsf0000019869 FBsf0000019889 FBsf0000024743 FBsf0000078000 FBsf0000076734 FBsf0000091923 FBsf0000195088 FBsf0000074144 FBsf0000086108 FBsf0000410873 FBsf0000407241 FBsf0000406340 FBsf0000398518 FBsf0000398478 FBsf0000398495
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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hide Sequence Data
Length 279
Comments
Sequence 
TGAAGATGTCGTTCAGGTCGTAGATGGACTTGACTATCTTGGTCACCTCC
TGCTCGCGGTGCTGCGCCACCCGCGTGTTCTCCTCCTCGAAGAGCAGCAG
CTGCTGTTGGGTCATCCGGCTGGCCGGCGGCCTTTGGAAGTGATCGTCGA
TGGCCTGCTCGTCGTCCTCGAACAGATAGCCGTTGCCGGACTTGCCCTCC
GCCGGCGGCTGCAGAAAGTTGTCGAAGGAGTCGACGAAGTTCTCGGCGCT
CTGCTCGCCCAGCTCCACGTTTGTGAAGA
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Gene(s)
(targeted or local)
Allele(s)
Transcripts(s)
Polypeptide(s)
Construct
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PCR template
genomic
(Horn et al., 2011.11.16)
Primer 1
TGAAGATGTCGTTCAGGTCG
(Horn et al., 2011.11.16)
Primer 2
TCTTCACAAACGTGGAGCTG
(Horn et al., 2011.11.16)
Comments
hide Collection Information
hide Collection: HD2HD2
Symbol HD2HD2
Source and Progenitors
Species of derivation D. melanogaster  
Strain of derivation
Vector or progenitor construct
Description
Collection of double-strand RNA fragments, used for genome-wide RNAi-knockdown assays in cell culture. RNAi targeting of transcripts annotated by the Berkeley Drosophila Genome Project and additionally predicted gene models.
 
Additional data
Cell lines
Observed in
Not observed in
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hide Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym
BKN28039
(Horn et al., 2011.11.16)
Secondary FlyBase IDs
    hide References ( 1 )
    Personal communication to FlyBase
    Horn et al., 2011.11.16, GenomeRNAi reagent in FlyBase
    GenomeRNAi reagent in FlyBase [FBrf0216883]