A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Sequence Feature: RNAi_reagent

General Information
Symbol BKN29976 Species D. melanogaster
Feature type RNAi_reagent FlyBase ID FBsf0000408136
Collection HD2   Associated gene(s) CG8436
Genomic Location
Chromosome (arm) 3R Sequence location 3R:5,085,749..5,086,026 [+]
Map ( GBrowse ) GBrowse View Help detailed view FBtr0081984 FBtr0081977 FBtr0339168 FBtr0081978 FBsf0000032174 FBsf0000032173 FBsf0000016035 FBsf0000032102 FBsf0000015904 FBsf0000032103 FBsf0000015905 FBsf0000081156 FBsf0000092556 FBsf0000091051 FBsf0000073428 FBsf0000404022 FBsf0000408136 FBsf0000405998 FBsf0000395613 FBsf0000395488 FBsf0000395489
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Sequence Data
Length 278
Comments
Sequence 
AAAACCCGGATGACTTAGCCAATGGATCGGCGACGATCATCGAGGCCAGG
CCAAGAAATGGTTTAGCTGCATTGCGAGCGGAAAAGGCGCGAGCCGAGAT
CAGTCAGTTCCAGAGTAAGACCAAGTTTCTTAAAACGGAAACGGACAATC
TAAAAGTAGAGCGCACACTGACTTTGCTTAAGATTCAGAAGCTTCGATTG
GAAATCGACGCCCTACGCGATTAAAATGTATTTTAACTATAGATAACTTT
TAAATGTCCGCATGGTGAACCCTTAATT
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Gene(s)
(targeted or local)
Allele(s)
Transcripts(s)
Polypeptide(s)
Construct
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PCR template
genomic
(Horn et al., 2011.11.16)
Primer 1
AAAACCCGGATGACTTAGCC
(Horn et al., 2011.11.16)
Primer 2
AATTAAGGGTTCACCATGCG
(Horn et al., 2011.11.16)
Comments
hide Collection Information
hide Collection: HD2HD2
Symbol HD2HD2
Source and Progenitors
Species of derivation D. melanogaster  
Strain of derivation
Vector or progenitor construct
Description
Collection of double-strand RNA fragments, used for genome-wide RNAi-knockdown assays in cell culture. RNAi targeting of transcripts annotated by the Berkeley Drosophila Genome Project and additionally predicted gene models.
 
Additional data
Cell lines
Observed in
Not observed in
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hide Stocks Listed in FlyBase ( 0 )
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hide Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym
BKN29976
(Horn et al., 2011.11.16)
Secondary FlyBase IDs
    hide References ( 1 )
    Personal communication to FlyBase
    Horn et al., 2011.11.16, GenomeRNAi reagent in FlyBase
    GenomeRNAi reagent in FlyBase [FBrf0216883]