A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Sequence Feature: RNAi_reagent

General Information
Symbol BKN45817 Species D. melanogaster
Feature type RNAi_reagent FlyBase ID FBsf0000413588
Collection HD2   Associated gene(s) mip120
Genomic Location
Chromosome (arm) 2R Sequence location 2R:9,397,944..9,398,601 [+]
Map ( GBrowse ) GBrowse View Help detailed view FBtr0087669 FBtr0087670 FBtr0301389 FBtr0301388 FBsf0000027021 FBsf0000006702 FBsf0000026736 FBsf0000006703 FBsf0000029098 FBsf0000029099 FBsf0000090819 FBsf0000082878 FBsf0000080273 FBsf0000169010 FBsf0000161539 FBsf0000405641 FBsf0000403075 FBsf0000413588 FBsf0000388984 FBsf0000388985
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Description
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This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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FB2013_03
FB2013_02
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hide Sequence Data
Length 658
Comments
Sequence 
ACCTTAAAGGGCATCCAACCGCTGGCCGGAGGCACTGCGAAGGCGTCGAC
TTCCAGCACGACGGCAACCACATCCCCATCTTTGGCACAGCCCAACAAAA
TTCAGGTGGTGCGCACTGCCGATGGCAAAATTATCAAGATCAATCAGGCT
GGTCCCTCACTGCTGGTGAACGCCAAACAGGGAACTGGGACCACAGTCAC
ACCAGGAGGTTCTGCCGCCACTTCTGTCAAACTATCTCCCTCCACGGGAA
ATGTGGTGCTCAACAAGCCCGTTGGCCAGGTAGTGGTGAGAACAGAAACT
CCTGTAAAAACGGCGACGGGCTCCGTTGCCAGTGCATCCGCAACACCGGG
CAAGATGTTGGTTCAAAGTGGCGGCAAACAGATTCTTGTATCCAACAAGA
ACATCATTAAGCTGTCGCCGAATGCGAGTGCCACCAGTTCGACAACCCAC
ACGACGGGCGGACAGACACCTTCCACCTCGAGCGGATTGCACGCTATTCA
GCTGCCTGGCAAGGGAGGAATACAATATGTACGTGTCCTGAACAACAATA
AGAGTGCCGCCGGAACAAGTGCAACAGCCTCAATCCCGAAAACAGTGCAA
ACTCAGAAGATCACTGTGGTGCGGCCACCGGCTGCTACTGGTGTTCCTGC
CACATCTA
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Gene(s)
(targeted or local)
Allele(s)
Transcripts(s)
Polypeptide(s)
Construct
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PCR template
genomic
(Horn et al., 2011.11.16)
Primer 1
ACCTTAAAGGGCATCCAACC
(Horn et al., 2011.11.16)
Primer 2
TAGATGTGGCAGGAACACCA
(Horn et al., 2011.11.16)
Comments
hide Collection Information
hide Collection: HD2HD2
Symbol HD2HD2
Source and Progenitors
Species of derivation D. melanogaster  
Strain of derivation
Vector or progenitor construct
Description
Collection of double-strand RNA fragments, used for genome-wide RNAi-knockdown assays in cell culture. RNAi targeting of transcripts annotated by the Berkeley Drosophila Genome Project and additionally predicted gene models.
 
Additional data
Cell lines
Observed in
Not observed in
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hide Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym
BKN45817
(Horn et al., 2011.11.16)
Secondary FlyBase IDs
    hide References ( 1 )
    Personal communication to FlyBase
    Horn et al., 2011.11.16, GenomeRNAi reagent in FlyBase
    GenomeRNAi reagent in FlyBase [FBrf0216883]