Sequence Feature: TSS

General Information
Symbol	TSS_mE1_011813	Species	D. melanogaster
Feature type	TSS	FlyBase ID	FBsf0000427405
Collection	mE_Transcription_Start_Sites	Associated gene(s)	l(1)G0136
Genomic Location
Chromosome (arm)	X	Sequence location	X:15,628,272..15,628,418 [+]
Map ( GBrowse )
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Sequence Data
Length
Comments
Sequence
Associated Information
Gene(s) (targeted or local)
Allele(s)
Transcripts(s)
Polypeptide(s)
Construct
Experimental Data
Progenitors
PCR template
Primer 1
Primer 2
Comments
Collection Information
Collection: mE_Transcription_Start_SitesmodENCODE_TSS
Symbol	mE_Transcription_Start_SitesmodENCODE_TSS
Source and Progenitors
Species of derivation	D. melanogaster
Strain of derivation
Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 17 (Hoskins et al., 2011) Comment:0-24 hr AEL
Vector or progenitor construct
Description
	Genomic sequences identified as transcription start sites (TSS); a synthesis of expressed sequence tags (ESTs), cap analysis of gene expression tags (CAGE) and RNA ligase mediated rapid amplification of cDNA ends (RLM-RACE). (Hoskins et al., 2011)
Additional data
	See component data set reports for details. (Hoskins et al., 2011)
Cell lines
Observed in
Not observed in
Comments
	Supported: defined only by one of the three assays and overlapping an annotated promoter or 5' UTR.
Stocks Listed in FlyBase ( 0 )

External Crossreferences & Linkouts

Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	chrX:15628272..15628418:+ (Hoskins et al., 2011) TSS_mE1_011813 (Hoskins et al., 2011)
Secondary FlyBase IDs

References ( 1 )
Supplementary material	Hoskins et al., 2011, Genome Res. 21(2): Supplemental Data File 3. Integrated promoters. [FBrf0213250]