A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Sequence Feature: RNAi_reagent

General Information
Symbol dsRNA-3048R Species D. melanogaster
Feature type RNAi_reagent FlyBase ID FBsf0000431613
Collection NIG_RNAi_Fly-1   Associated gene(s) Traf4
Genomic Location
Chromosome (arm) 2L Sequence location 2L:4,372,284..4,379,149 [+]
Map ( GBrowse ) GBrowse View Help detailed view FBtr0334401 FBtr0077429 FBtr0077464 FBtr0077463 FBsf0000000779 FBsf0000025932 FBsf0000195001 FBsf0000084455 FBsf0000195316 FBsf0000405729 FBsf0000408348 FBsf0000384892
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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Length 502
Comments
One copy of repeat shown.
(Japanese National Institute of Genetics, 2012.5.21)
Sequence 
TTTGGCCCAGTGGACGAAGACGCTGAGCTTCCCCTCGCGTCTCTCGCCCA
ATCGCAACTCCAAGGACTGCTCCACTCTGGCCAGTCCCGTACCGCCACCA
ACTCCCCCCCGGAACAAGACGACCTCCGGCAGTGGAAANCTGcGCCACAT
CGCGCTCCTCCTCGTCGACGGTGTCCTCATCGCACTCGTCCTCACACAGT
TCACCCACTCCTGGGAACAACAACAACAACATGCCCATCACGGAACTGGA
ACAGATTATCTATCCCGGTCCCGATCCAAAACACATTATGGGCTCATTGG
TCTTTTGCATTCATCACAAACAGGGCTGCAAGTGGTCCGATGAGCTGCGA
AAGCTGAAGGGACATCTCAACGCCTGTAAGCACGATGCCACCCAGTGCCC
CAACAAGTGCGGAGCCCAGATTCCCCNGCATCATGATGACCGATCATCTC
CAGTACACCTGCACGATGAGGCGTACCCGCTGCGAGTTCTGCCAGAGCGA
AT
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Gene(s)
(targeted or local)
Allele(s)
Transcripts(s)
Polypeptide(s)
Construct
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PCR template
cDNA
(Japanese National Institute of Genetics, 2012.5.21)
Primer 1
aaggcctacatggccggaccgTTTGGCCCAGTGGACGAAGAC
(Japanese National Institute of Genetics, 2012.5.21)
Primer 2
aatctagaggtaccATTCGCTCTGGCAGAACTCGC
(Japanese National Institute of Genetics, 2012.5.21)
Comments
hide Collection Information
hide Collection: NIG_RNAi_Fly-1
Symbol NIG_RNAi_Fly-1
Source and Progenitors
Species of derivation D. melanogaster  
Strain of derivation
Vector or progenitor construct
Description
Comprehensive collection of stocks carrying UAS-RNAi transgenes, each designed to target a single protein-coding gene.
(Japanese National Institute of Genetics, 2012.5.21)
Additional data
A collection of over 6,400 RNAi transgenes (over 12,300 lines), each designed to target a single protein-coding gene. Each construct contains a pair of identical 500-bp amplicons produced using cDNA templates. These have been cloned as inverted repeats that are expressed using the binary GAL4/UAS system, producing transcripts capable of assuming a double-stranded RNA structure.
(Japanese National Institute of Genetics, 2012.5.21)
Cell lines
Observed in
Not observed in
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hide Stocks Listed in FlyBase ( 0 )
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hide Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym
3048R
(Japanese National Institute of Genetics, 2012.5.21)
dsRNA-3048R
 
Secondary FlyBase IDs
    hide References ( 1 )
    Stock list
    Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY.
    RNAi stocks available from NIG-FLY. [FBrf0218457]