A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Sequence Feature: regulatory_region

General Information
Symbol wor_CRM3 Species D. melanogaster
Feature type regulatory_region FlyBase ID FBsf0000435028
Collection REDfly CRMs   Associated gene(s) wor
Genomic Location
Chromosome (arm) 2L Sequence location 2L:15,425,361..15,426,360 [-]
Map ( GBrowse ) GBrowse View Help detailed view FBsf0000435028 FBsf0000217793 FBsf0000217794 FBsf0000242192 FBsf0000234963 FBsf0000242193 FBsf0000322546 FBsf0000322547 FBsf0000322548 FBsf0000337647 FBsf0000351379 FBsf0000351380 FBsf0000298791 FBsf0000238165 FBsf0000298792 FBsf0000417217
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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hide Sequence Data
Length 1000
Comments
Sequence 
ATCTTCACACTCTCCGATCAGCAAAGTCAGCCGAATATGTGATCGTTTAA
GCTCAGCTCAGAAAAATTTGAATAGTAAACATAATAAGAAGCTTAAGAAA
ACACAGCTGAATTATCCTCCGAATAGCACAGAAAGCTATCTCTTAAGTTC
GTGGGACGACTGACAGTTGGAACAAGAGCGCCCCAAAGAGCGAAGAGAGT
TGAAAATTGTGGGGTACGAAACTTCTCTTGGTGGGGCTCCAAAGAGCATG
CTCACCTGCTCACGAAGAGCAAACGTCCATTAGGCTTATATACAAAGCGA
TCGTGTGAGGCGGACCCGAAAGAGGCTTATAAATAAACTTGATCGGGTAT
ATAGCAATAGCAAGCTCGCCACCAGCTGCCGCTCACTCATACCATTGAAA
TTCAGGGGAAATACGAGCTGAACCAGAGAGGCAGCTGGTGGCGATCGGCG
AGTGGAACGGAGAGAGTCCCTGTGGCACGTGCTCGCTTTTTACACACAGA
TTTGTTCCTCTCGTCTCCAGGTCCCTCCCTCTCTCAACGATTCTCTATAT
GGCAGTGGTACCCCCGGACTGCCCGATCTGCAGCTGTATCTGCGTTCAAT
GAACGCACAGCTGTGGCTCGATCGCTGAATGGATCTTTTGGCTCGTGGTT
CGGGGTGGATTTACAGAATCCCGGGCGACATCGGAAGTAGGTAGACGCCA
AGATCCTTTTTGCCCAGGGGGTTGATCATCCTGCCAGGGGGTTGATCGGG
AGTCTATAAAACCGGACTGATCCTTGCCGGGTTGCATCATTCGAGCAAGG
AACTCCAAGCGATCGAGACGCGTGTGGCGAAAGCAAATGAGTGAGCAGTG
ATTTAAGTTCAAGGATCGGTATTAAATACAAAATCGAAGATCAGTGATCA
GTAACCATAAGGAATAATAACATAGCAACCATGGATAAACTCAAGTACAG
CCGCTGCCCGCTCAAGAAGCGTCCGATAATGGTGGAGGAGTCCAGCCCAG
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Gene(s)
(targeted or local)
Allele(s)
Transcripts(s)
Polypeptide(s)
Construct
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hide Progenitors
PCR template
Primer 1
Primer 2
Comments
hide Collection Information
hide Collection: REDfly CRMs
Symbol REDfly CRMs
Source and Progenitors
Species of derivation D. melanogaster  
Strain of derivation
Vector or progenitor construct
Description
Experimentally validated, minimal functional cis-regulatory regions (CRMs) curated from the literature by REDfly (version 3.0).
(Halfon, 2012.6.19)
Additional data
Cell lines
Observed in
Not observed in
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hide Stocks Listed in FlyBase ( 0 )
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REDfly
•
hide Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym
wor_CRM3
 
Secondary FlyBase IDs
    hide References ( 2 )
    Research paper
    Rouault et al., 2010, Proc. Natl. Acad. Sci. U.S.A. 107(33): 14615--14620
    Genome-wide identification of cis-regulatory motifs and modules underlying gene coregulation using statistics and phylogeny. [FBrf0211646]
    Personal communication to FlyBase
    Halfon, 2012.6.19, REDfly CRMs and TFBS as mapped FlyBase features.
    REDfly CRMs and TFBS as mapped FlyBase features. [FBrf0218775]