A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Sequence Feature: regulatory_region

General Information
Symbol sc_CRM39 Species D. melanogaster
Feature type regulatory_region FlyBase ID FBsf0000435533
Collection REDfly CRMs   Associated gene(s) sc
Genomic Location
Chromosome (arm) X Sequence location X:286,744..287,743 [+]
Map ( GBrowse ) GBrowse View Help detailed view FBsf0000160801 FBsf0000162105 FBsf0000162107 FBsf0000435081 FBsf0000435533 FBsf0000436216 FBsf0000161244 FBsf0000435486 FBsf0000198035 FBsf0000204647 FBsf0000331130 FBsf0000204648 FBsf0000331131 FBsf0000377691 FBsf0000377692 FBsf0000315445 FBsf0000315446
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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Length 1000
Comments
Sequence 
TAGTTAATTATTGCTCTCATATTTGAAAGTAAAATTTAAAAAAGGTTCGG
TAAAGCAATTTCCTTATTATAAGGTAACAGCTGAAAAACTAGGCTTCTCT
ATACAAACGTTTTAGCCAAGTCAAACTTTTCATACCCCAATTGTTGGTCC
AAGCAGGGAAGCCAAATCAAAATGGCCCACGATCCCAACATCTTTGTTTG
CATGACGAACTGGAGCTGAACCTTTGGGTTGAGCAAAGTTCAATGCGCCG
TTGCCGCGGTATCTGTATCTTAGCATCTTTACCCATATCGGTCTTCTGTA
TCTTTGGTAGTGACTTTAACTTCGGCTCCCCTATTTTGTGGCGTTAAGGC
ACCGAAAATGCCAGTCGGTGCAGAAAAAAGCAACCCCTAACAAATGAGCG
TGTGTTCATTTTATTTGTGCCCTGTGCTGCGCACGGTTATTTTTCAGCTG
CACCAGAAAAAGAATGGTGGAAATCGATGTATAAAGTTGGTTGTCTAAGC
CCGTATGCCCTGCTACGTTTGTTCTTCTATACTTTTCAGAGTTCTTTCCT
CCGCGATCCAATTCGTTCGACTAAATACACCTGCCACGCGTCGCCATGGT
CCAGATATCCAACGAGTCTTAAGGGCAAGGAGGGTGCGACTCCTGCGCAT
GCTCCTGCATTTAATTAAATTATTAACTACGAAAATGACTGAGCTAAATA
AAGAGGGAGAGATACATCTACGCTTCATCAACAGTAAAACGCAAAAATTA
AACCACGAGCGTCACTTAGATTTATATTAAAACTTTTGATAATAAAAATG
GTCAAAAACATTTACTTAAAATATAAATATTTAAATAACAGAAATTTCAC
TATATACTCTTGTAATGCACTTATAATAATTTTATATACAACCTATTAAA
TAATATTTTTACGTGTAGAAATGAACGCGACAACAGAAATATCTATATGC
AAGTATACATATACTTGTATCCCTCACTCTTTTTCACTTTTTCTTTTTTC
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Gene(s)
(targeted or local)
Allele(s)
Transcripts(s)
Polypeptide(s)
Construct
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hide Progenitors
PCR template
Primer 1
Primer 2
Comments
hide Collection Information
hide Collection: REDfly CRMs
Symbol REDfly CRMs
Source and Progenitors
Species of derivation D. melanogaster  
Strain of derivation
Vector or progenitor construct
Description
Experimentally validated, minimal functional cis-regulatory regions (CRMs) curated from the literature by REDfly (version 3.0).
(Halfon, 2012.6.19)
Additional data
Cell lines
Observed in
Not observed in
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hide Stocks Listed in FlyBase ( 0 )
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REDfly
•
hide Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym
sc_CRM39
 
Secondary FlyBase IDs
    hide References ( 2 )
    Research paper
    Rouault et al., 2010, Proc. Natl. Acad. Sci. U.S.A. 107(33): 14615--14620
    Genome-wide identification of cis-regulatory motifs and modules underlying gene coregulation using statistics and phylogeny. [FBrf0211646]
    Personal communication to FlyBase
    Halfon, 2012.6.19, REDfly CRMs and TFBS as mapped FlyBase features.
    REDfly CRMs and TFBS as mapped FlyBase features. [FBrf0218775]