A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Sequence Feature: regulatory_region

General Information
Symbol Rh3_promoter Species D. melanogaster
Feature type regulatory_region FlyBase ID FBsf0000435832
Collection REDfly CRMs   Associated gene(s) Rh3
Genomic Location
Chromosome (arm) 3R Sequence location 3R:15,908,154..15,908,698 [-]
Map ( GBrowse ) GBrowse View Help detailed view FBsf0000154616 FBsf0000435252 FBsf0000436710 FBsf0000435832 FBsf0000248817 FBsf0000373372 FBsf0000373373 FBsf0000312921
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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Length 545
Comments
Sequence 
GCAGCTGACTGCACTGAATTTTGTAGTTTAATACACAAATCCGCAAATTG
CATCTCACTTCAAATAGCCTGGTACATAGTATCTACTAACATAACTCATA
TTAAAATAAAGCAACCAACCAGAGGGCCGAAGTTCTATTAATAAAACTAA
TATTTAACTATTATATATACATTTTATTTACTTGGTACGCTTATGATAAC
CTTCGAAAGAGAACCAACACAATACGCTTTGTCATTTGAAAAATAAATAT
GCTGTAACTACTTTACAAGGTGAAACTCTTGTCAGAAGATAAGAGGCTAG
GTAAGTTGATTATTCAATCAGTTTACTTACTGCAACCCAAAATGGTCACT
GCACTAACCTTCAGATGAGCTGCACTACACCCTCAATCGAGAATCAATGC
AAACGCAGTGCCAGCGAAAATGTCAGCAAGGGATTAGGCCAATCCCAAAC
GGGTAATCCCGCTGCGACAATGCTAATCCAATTCCGATGGGCCGTATAAA
AGCCCCAAGCTGGGCTGGCTGTGATTTCGTCTTGGCCCGCAGACC
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Gene(s)
(targeted or local)
Allele(s)
Transcripts(s)
Polypeptide(s)
Construct
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PCR template
Primer 1
Primer 2
Comments
hide Collection Information
hide Collection: REDfly CRMs
Symbol REDfly CRMs
Source and Progenitors
Species of derivation D. melanogaster  
Strain of derivation
Vector or progenitor construct
Description
Experimentally validated, minimal functional cis-regulatory regions (CRMs) curated from the literature by REDfly (version 3.0).
(Halfon, 2012.6.19)
Additional data
Cell lines
Observed in
Not observed in
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REDfly
•
hide Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym
Rh3_promoter
 
Secondary FlyBase IDs
    hide References ( 2 )
    Research paper
    Papatsenko et al., 2001, Mech. Dev. 101(1-2): 143--153
    A conserved regulatory element present in all Drosophila rhodopsin genes mediates Pax6 functions and participates in the fine-tuning of cell-specific expression. [FBrf0134746]
    Personal communication to FlyBase
    Halfon, 2012.6.19, REDfly CRMs and TFBS as mapped FlyBase features.
    REDfly CRMs and TFBS as mapped FlyBase features. [FBrf0218775]