A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Sequence Feature: regulatory_region

General Information
Symbol spdo_spdoCRM3 Species D. melanogaster
Feature type regulatory_region FlyBase ID FBsf0000435900
Collection REDfly CRMs   Associated gene(s) spdo
Genomic Location
Chromosome (arm) 3R Sequence location 3R:26,300,357..26,301,356 [+]
Map ( GBrowse ) GBrowse View Help detailed view FBsf0000435900 FBsf0000436577 FBsf0000435902 FBsf0000234253 FBsf0000234254 FBsf0000234255 FBsf0000237682 FBsf0000330895 FBsf0000266454 FBsf0000330896 FBsf0000330897 FBsf0000376710 FBsf0000376711 FBsf0000314821 FBsf0000286993 FBsf0000314822 FBsf0000286994 FBsf0000314823
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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hide Sequence Data
Length 1000
Comments
Sequence 
ATGTTACAATCAGTAAATGCGGAGAGTTATTTCTATGTTATACCCTACAG
ATCTGAGTTATTCAGTTTGTAACTTCGGATAATTATCCGAACCCTAGACC
TCAAAAACCAGCTCCAGTCGGACCCCCGTGATACTTAGCATAAATAATTC
TTATGCAAATGGTGCCAAGATGTTGCTAGTCCGTAAATGGGGGACTTGAA
TAGACGTTCAGGTAGTCGCTTGCATTCTGGTAATTACTTTTGCCACGTGC
GAGGGCAGCTGTTGCACGCACCTATGCTGTTTTACTACAACTGAGTGTGT
ATCTGTATCTGTAAATGTATCTGAGGAGGCGCCCCTCACACACATGACTG
CAGATACATATCTCTTGCTTATATGCGAAGGGGATCTATGTGGCGTATAT
ATATGACAACTGGCAGCGGAAATAATATGGGGGAGAGAGCAGGGTGCAGG
ATGCGGTGAGACAACTCCCCTAATCAAATAATGCCAGTCGCACTCAGGAC
TCAGGATTCAGGATCTATCTTTGCGGCTGTTTCTCTGCTGTTCAGTTCAG
TTGAGTTTAGTTGAGTTTCTGTTCCTGCATTTGTACCTTGGTTGTGTCAC
AACAAAGGACGAGACAGGATCCTCGCAAACAGCTGACAGCTGTGTGCCTG
CCGTCTCTGTCTGTTATCCTTGTGCGCTGTCATTGCCCCTGCCTTTGAGT
ATCTGCATCCGAGTATCCTTCGGATACTGTGCAGAAACCCCGCACTCTAG
TCGCGTGCCGTCTGCCGGCGTTTAACTTTATATGCATCTTAAATTTTCCC
ACCGACCAGCTGTTGGTGCCTCCAATTTCTGGCTAATCCGCTTGACAAAT
GCCCCCGGCTGCGCTGATTTGCTTCTGGCCAAAAGGCAATTAAGTTGGCC
ACCACAAAAGGACAACACGCGTGCATCCAACCTGCGGGCTCAAAGGCATG
TACATATGTATGCACGTGGGAGGCGAAATCCGGATAAAGTTGACCCACGA
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Gene(s)
(targeted or local)
Allele(s)
Transcripts(s)
Polypeptide(s)
Construct
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hide Progenitors
PCR template
Primer 1
Primer 2
Comments
hide Collection Information
hide Collection: REDfly CRMs
Symbol REDfly CRMs
Source and Progenitors
Species of derivation D. melanogaster  
Strain of derivation
Vector or progenitor construct
Description
Experimentally validated, minimal functional cis-regulatory regions (CRMs) curated from the literature by REDfly (version 3.0).
(Halfon, 2012.6.19)
Additional data
Cell lines
Observed in
Not observed in
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hide Stocks Listed in FlyBase ( 0 )
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REDfly
•
hide Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym
spdo_spdoCRM3
 
Secondary FlyBase IDs
    hide References ( 2 )
    Research paper
    Rouault et al., 2010, Proc. Natl. Acad. Sci. U.S.A. 107(33): 14615--14620
    Genome-wide identification of cis-regulatory motifs and modules underlying gene coregulation using statistics and phylogeny. [FBrf0211646]
    Personal communication to FlyBase
    Halfon, 2012.6.19, REDfly CRMs and TFBS as mapped FlyBase features.
    REDfly CRMs and TFBS as mapped FlyBase features. [FBrf0218775]