A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Sequence Feature: regulatory_region

General Information
Symbol CG13896_CRM5 Species D. melanogaster
Feature type regulatory_region FlyBase ID FBsf0000436266
Collection REDfly CRMs   Associated gene(s) CG13896
Genomic Location
Chromosome (arm) 3L Sequence location 3L:715,989..716,988 [-]
Map ( GBrowse ) GBrowse View Help detailed view FBsf0000436266 FBsf0000186438 FBsf0000252493 FBsf0000202600 FBsf0000325609 FBsf0000325610 FBsf0000325611 FBsf0000360839 FBsf0000360840 FBsf0000360841 FBsf0000304826
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Description
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This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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Length 1000
Comments
Sequence 
ATATGGTGAAACGCAGATTTCTTTTGCGAAATGGGCGCGGCAGGTGCGGA
TTCTTTTTGGCTTTCCCACGCGCCTAGAGGCGATTTTCGCCAAAGGGGAG
GAATATCAGAGGGGCCATTGTTTTGTGTGCAATCTGCCATCTTGGCAGTC
GGTCCACACTAACAAGCTGCCGAACGGTCCGCCGTTGCACCTTTATTATT
TTTAATTGGACTGATTTCCCGCTACAGATACATTTGTATCTGCGCGTGCG
CAGCGTTGACATATGGCATCCACGCCGCAGTCCATCCAGCTCCAATCCAA
TCATCCTAGGCCATCATCCATCGAAGTTTGCTAAACAAGACGCGACTGTA
CGGGTACGGCTGGCAGCTGGGATCACGGAACCAGGATCGGGATCGAAGTC
ATCTTGACCAGCTGTGTGGCTCCTTGCGTTGCGGCCACGAGGCCAAGGGT
TGTCGTTTTCGGTCGGGGTTGTCAGGGTTGTGCCGCGAACTTTTCCCACG
ATTGCGTCAACATCAGCTGCACTTTTGCGCGCTGTTTTCATCGACTACAG
TGAGGAAAAATATTTCAATAAAGAAAGCAATATGTTTGTCAAGCCAAAAA
AAAAGTACGGATAATGTGAAATGATTAAATGATTAATTTATGAACATCTT
ACGATATTTATCGGACCTAAAATTGTAACATATTTTGTGGCATACTTATA
TACCTATAAACCTTTACAATCGATATTAAAGTGACTTCTTGTTTTCTTTT
GAAACATTTTGACTTAGATTCGTTAGTTTTACTTTAAATTGTCCATATTC
GTACCAGTGTACCCGGCTTGATTTCTTTTTTTTCGCGATTGTTTTTTGCG
CCGCCCGGTGAGTCCTGACTAGCGTCCTTGGGGTAGAAGAAGACAGAGAG
CTGCCGTCAGGGACAACCTGCCGTGGCAAAGCGGCAACCTCAATTAGGGG
TTGTCATCTGGTCGGATCTCGATAAAGCAGCCGCTGACATACTGCGACAT
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Gene(s)
(targeted or local)
Allele(s)
Transcripts(s)
Polypeptide(s)
Construct
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hide Progenitors
PCR template
Primer 1
Primer 2
Comments
hide Collection Information
hide Collection: REDfly CRMs
Symbol REDfly CRMs
Source and Progenitors
Species of derivation D. melanogaster  
Strain of derivation
Vector or progenitor construct
Description
Experimentally validated, minimal functional cis-regulatory regions (CRMs) curated from the literature by REDfly (version 3.0).
(Halfon, 2012.6.19)
Additional data
Cell lines
Observed in
Not observed in
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hide Stocks Listed in FlyBase ( 0 )
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REDfly
•
hide Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym
CG13896_CRM5
 
Secondary FlyBase IDs
    hide References ( 2 )
    Research paper
    Rouault et al., 2010, Proc. Natl. Acad. Sci. U.S.A. 107(33): 14615--14620
    Genome-wide identification of cis-regulatory motifs and modules underlying gene coregulation using statistics and phylogeny. [FBrf0211646]
    Personal communication to FlyBase
    Halfon, 2012.6.19, REDfly CRMs and TFBS as mapped FlyBase features.
    REDfly CRMs and TFBS as mapped FlyBase features. [FBrf0218775]