A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Sequence Feature: regulatory_region

General Information
Symbol CG9363_CG9363CRM1 Species D. melanogaster
Feature type regulatory_region FlyBase ID FBsf0000436426
Collection REDfly CRMs   Associated gene(s) GstZ2
Genomic Location
Chromosome (arm) 3R Sequence location 3R:5,284,700..5,285,699 [-]
Map ( GBrowse ) GBrowse View Help detailed view FBsf0000436426 FBsf0000237067 FBsf0000340769 FBsf0000369916 FBsf0000369917 FBsf0000423350 FBsf0000423351 FBsf0000423352
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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Length 1000
Comments
Sequence 
TATAAACATTTGTCCTTGCTTAAATTAATTTATAAAACTTGCTTGATTTA
ATCACTATACATATTTAGGTAAAAGGCTTTTTGAATAACTGTTTTACATT
TGTTGGAATAAATATAAGCTATAACAGAGAGGCATCTAATCCAACCCGCC
TTCCACTTATGGCTTAGTTTTAGACCGAACTCGACAACCCTGCCCCTGGG
TTTTGACTCAAACTCTAACGCGCCGACGGCCGAGCAACCCCTGAAAAAGC
ACACCCTCTCCAAGCGAATGGCGAAACTTCTGAGCCAATTTTCTCTTGAG
TAGGGGTCCTGTGTCCTTGGAGCTGCCTTCGCGCTGTGGACTCAGGACAA
CGACAACTTGAATAAGGTTAATGCCCCTAGCCGACCTTGGGGTGCGACAC
AGTTCGGGACTCGGGAGCTCGGGACCTCGCTGCTCGGGGTTCGGGGTTCG
AATGTAGGATGTCGGATATCGAAACTTATCGGACCCACCGTCCTCACTTT
CGCCTGGGTTCATTGAACTTTTAGGGAACTCATTATGCTTTCGGTGAATA
CAGTTTCGTGTGGGTGGCGACGACAACGACCCGTCGATAGGCTCTGCTGG
GTTGATTGGCCAAGCCGGAACAGCCAGCTGTGTGTATATCATTTTAGGGC
TCGTCCTCATCGGCGGCCATTTGGTTAGGATATATAGTATATGGTATAGG
GTCCGATACCGACCACCTCGACCGCCCGAAGCTCTCCACTGTTGCTTTGC
AGCTGTTGTCGGGCGCTATTTTTGGTGCAAGTCGAACTCAACGCTGTGCT
TTTTGTCAGTCTATCGCTGGCGTTGCTCCTGTCTGGACACCATGAATCAT
GTGGGTACATATGCAAACATCCATCCGAGAGCCTCGGAGAAAATCCCTGT
TATCTGTGCATAGAAATAAGCGATAAGTGCGTAATTGAGTGCTCTGGCTT
ATCGCGAAGTAAACCAAATAGCCGCGCTAAATGCAAATGATTAAACCAGT
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Gene(s)
(targeted or local)
Allele(s)
Transcripts(s)
Polypeptide(s)
Construct
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PCR template
Primer 1
Primer 2
Comments
hide Collection Information
hide Collection: REDfly CRMs
Symbol REDfly CRMs
Source and Progenitors
Species of derivation D. melanogaster  
Strain of derivation
Vector or progenitor construct
Description
Experimentally validated, minimal functional cis-regulatory regions (CRMs) curated from the literature by REDfly (version 3.0).
(Halfon, 2012.6.19)
Additional data
Cell lines
Observed in
Not observed in
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REDfly
•
hide Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym
CG9363_CG9363CRM1
 
Secondary FlyBase IDs
    hide References ( 2 )
    Research paper
    Rouault et al., 2010, Proc. Natl. Acad. Sci. U.S.A. 107(33): 14615--14620
    Genome-wide identification of cis-regulatory motifs and modules underlying gene coregulation using statistics and phylogeny. [FBrf0211646]
    Personal communication to FlyBase
    Halfon, 2012.6.19, REDfly CRMs and TFBS as mapped FlyBase features.
    REDfly CRMs and TFBS as mapped FlyBase features. [FBrf0218775]