A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Sequence Feature: regulatory_region

General Information
Symbol Spn_369bp_CRM Species D. melanogaster
Feature type regulatory_region FlyBase ID FBsf0000436656
Collection REDfly CRMs   Associated gene(s) Spn
Genomic Location
Chromosome (arm) 3L Sequence location 3L:2,553,322..2,553,690 [-]
Map ( GBrowse ) GBrowse View Help detailed view FBsf0000156877 FBsf0000436656 FBsf0000189736 FBsf0000189737 FBsf0000222658 FBsf0000222659 FBsf0000258486 FBsf0000260083 FBsf0000255433 FBsf0000250100 FBsf0000196934 FBsf0000262298 FBsf0000202780 FBsf0000325848 FBsf0000325849 FBsf0000256952 FBsf0000336443 FBsf0000339399 FBsf0000339400 FBsf0000214388 FBsf0000361531 FBsf0000305203 FBsf0000281964 FBsf0000305204 FBsf0000239059 FBsf0000281965 FBsf0000305205
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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hide Sequence Data
Length 369
Comments
Sequence 
CATTTGGAGTAGCGGCATTTTTAGGGGTGTGTGTGAGTTCGAGTCCTGTC
GTCCTGCTTGCACCCTCTGCGCAGAAGCAGGACAGCAAAAAACCCCCGAA
AAAACAATTGCAAATTGCAGAATTGCGAGCGAAACACGAAAATACGAAAA
TAGTTTCGGCCAACAGCTGGCGAAGTTTCAGACACCTGGCGAAAAAACCA
ACATGGGACACTTAAACAGTTAAACGGTTCTCCTTTTTATGGCTTTTAAT
AACTGGTTTCGCAGAGCCTTTTCGCGTAGGTGCGAGCGAGCAGGAAGTAT
GCCCCAACCAAAGAACCGTTGATCGCAAAATGCAACTCCGATCGGGTGGG
AATGAGTAAGAGAAGCGGG
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Gene(s)
(targeted or local)
Allele(s)
Transcripts(s)
Polypeptide(s)
Construct
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PCR template
Primer 1
Primer 2
Comments
hide Collection Information
hide Collection: REDfly CRMs
Symbol REDfly CRMs
Source and Progenitors
Species of derivation D. melanogaster  
Strain of derivation
Vector or progenitor construct
Description
Experimentally validated, minimal functional cis-regulatory regions (CRMs) curated from the literature by REDfly (version 3.0).
(Halfon, 2012.6.19)
Additional data
Cell lines
Observed in
Not observed in
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REDfly
•
hide Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym
Spn_369bp_CRM
 
Secondary FlyBase IDs
    hide References ( 2 )
    Research paper
    Aerts et al., 2010, PLoS Biol. 8(7): e1000435
    Robust Target Gene Discovery through Transcriptome Perturbations and Genome-Wide Enhancer Predictions in Drosophila Uncovers a Regulatory Basis for Sensory Specification. [FBrf0211419]
    Personal communication to FlyBase
    Halfon, 2012.6.19, REDfly CRMs and TFBS as mapped FlyBase features.
    REDfly CRMs and TFBS as mapped FlyBase features. [FBrf0218775]