A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Sequence Feature: regulatory_region

General Information
Symbol rdo_rdo_PFE_PE Species D. melanogaster
Feature type regulatory_region FlyBase ID FBsf0000436785
Collection REDfly CRMs   Associated gene(s) rdo
Genomic Location
Chromosome (arm) 2L Sequence location 2L:18,013,213..18,015,611 [+]
Map ( GBrowse ) GBrowse View Help detailed view FBsf0000436785 FBsf0000187927 FBsf0000250007 FBsf0000417377
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Description
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FB2013_03
FB2013_02
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Sequence Data
Length 2399
Comments
Sequence 
TTTTGGGAAGAAAAGGGTTGGATGGGGCAGACTTATTATATTTATTTTTA
AATTTCCACGTGTCATGTTAAAAAACTATGGATGGAAAACCATATTTATT
TGCTCAAAATGAATAAATTTACCTTATCTTATCCTTGTCTATTTTTTTTT
TGTATTTAATTTCCATATTTAAAGTTATAAAAATATGATCTAAATGTTAA
TAAATATGAATTTACATGATTCTATACAGTTCTACCAAAGTACAACTACC
AAAAGCATTTTATAAATCGATTGAAAAACGTTCCCATTGGCCACGCATAT
TGTTGTTTATCTTTATATTTCCAAGGCACACGAGTAGTTACCTCTGAGCT
AAGATTGATTTACACCTGCTCGGATGTCTTGCCAATCAGAAACCGCAAGA
CAAACACTACCTGCGCACTCGCGAACATATCAGATCGCGTATACTTCCGC
TCTTAGAGGGTTTCGCTTAAAACGGTTTCCGCGAAAAAATTAACTTTCCT
AGAATCTGAAAATACGTCCCTGAATAGCTGAGTAGAATAAATCAATGAGT
AATTACAGAAGTGTTATTGATTTTGGGCTCCTTTCTCTCGAGCATAAATT
AGAGCCAATAAATATCGCGACATTAGGGAAATTTTATCGGTTTCGGATGG
CCGAAGATTATATTAATGGGTGCCATTAATATTTAATCCTCGACAACAGG
TTTCACCAGCGTTAAGGACACAGAGAACGCCAAAGAAATAAAACCATCCA
TCCCATTATTTGGCAGAAGGAGAATTGGAAACTTTTGCAAACAGCACCTG
TGTCTAAGGAATTTTTAATAAAATCTCCTGAAAAAGTGGTAAACTCAACA
AAGCCATTCGTCATGCTCAAGTAACTTGGGTTTTAGACTTTTGGGGTTTT
TCCCTTTCGCATGCTTTTTCTTGCTGGTCAGCGAACCAGTTTGGCATCAT
AATTATGCAACCAGGCATGCAGCTGAGGACACTGTCGGCTGCCAAAGGGT
TGAAAGGAACCCTTTCTTTCTTTATACATTTAAATTTGGGTCACTTACGG
CCGAAGCAAATTGTAATTAAAATATGAATTTTCCATGCAGCCATATAACA
ATTCACTTTTAATTTTAATCATTAAATCCCAAAAAAAAAAAAAAAACACT
TTTATTTTGAACAAAGCGCAACTCTTTTTTCACTTTTGCGACGGCCTTGA
CGGACTTAAAGAGTCCTGACTGTGGAAAATAATCATCATCAGCCGCAGGA
TTTCAAACCACCATCATTATCGTCTGCTGGTCTGGTTTGCATAATTTCAT
ACATAAACTGTCGCTTTTTGTGCGCATAATCTGCAGCTTTTAAACAAAAA
AAAAAAAAAAATAGGCAAAAAATATTAAATAAAACGCAGTGTCGGCGGAA
AGGTGTCATATACTCCAAAAATTGGGTGTTCTAAATGTTCGAGAAATGAA
GCGCTGAAAAGTTGGTCGCGTTACGCATCCGCCATGTTGCGCGGCGCCAA
GTGGTGAGGATTACGCCGGGGTTCCCATATACTTAATGACATGCAGCTGC
TGTTTTACTTGCGGTTTCTCCCTGGAGCCCCCAGGAACCTTTAGTAAATT
TTGCTGTCTTGTCCCCCTCCGGACTAACTTATGAATTTTAAGGTGATTTC
CATGTCGCAGGACCAAGTTCAGGAAACTTTGGATTGGGGGTCCTTTGGGA
ATATGGGATGAGTGCCACGTCACATCGGGGACTTGTCAGCAAAGGGTTGA
TCGCATCATAAATCAAACGAACTGTTAGCCCAGTTCGCAATCAAAATCAT
TCTGCGGTCTGCAGCATTTGTTCCTCAGAATGTGGTAATTAATCATCGAA
AGTAATTGGTTTTCTGTTTTGATTTGACATTTGAAAAATTGCAGCTGTGA
CAATTCAATCCCAGTTCCAGTTTATTTGCCTAGCGCCATTTACTTCGCTG
GTTTTTCAGTGCAAAATGCTGCAAAATAAACGCAAAAGTTTATTATACTT
TGGTTTTTGCCGAAGTGAAATGGTGACCTATGCAAATTTATGAATGCAAA
TTAAATATAAACGAACGCATAAATGCGGCTTAAAAATATTGCCACGCAAT
ATTGGCAAACAATGGGATTAACTGGACAAAAAATGGTAGGGAGTGTCCTT
GAAGTCCATGTTTTTTAGCACGGGTATTCATAGGCTAAATTGCCAATATG
GCCGCAACTCTGGCTTTAACGGAATTATGTCGCTAATTTAATGATGGCAA
ATGTATTGTTTTGTCGTTGGCCCCACTGAGATTGGTTTATGGGCGCAACC
GTTTATACAACTTTGCAAACAAACCAAATAAACTCAGAAATTAAACTAAG
ACGCAAATAAAGTTTGTGAGGCACAGTCGCGATGTTGGCACTTAAAACT
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Gene(s)
(targeted or local)
Allele(s)
Transcripts(s)
Polypeptide(s)
Construct
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hide Progenitors
PCR template
Primer 1
Primer 2
Comments
hide Collection Information
hide Collection: REDfly CRMs
Symbol REDfly CRMs
Source and Progenitors
Species of derivation D. melanogaster  
Strain of derivation
Vector or progenitor construct
Description
Experimentally validated, minimal functional cis-regulatory regions (CRMs) curated from the literature by REDfly (version 3.0).
(Halfon, 2012.6.19)
Additional data
Cell lines
Observed in
Not observed in
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hide Stocks Listed in FlyBase ( 0 )
hide External Crossreferences & Linkouts
REDfly
•
hide Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym
rdo_rdo_PFE_PE
 
Secondary FlyBase IDs
    hide References ( 2 )
    Research paper
    Reeves and Posakony, 2005, Dev. Cell 8(3): 413--425
    Genetic programs activated by proneural proteins in the developing Drosophila PNS. [FBrf0183881]
    Personal communication to FlyBase
    Halfon, 2012.6.19, REDfly CRMs and TFBS as mapped FlyBase features.
    REDfly CRMs and TFBS as mapped FlyBase features. [FBrf0218775]