A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Sequence Feature: regulatory_region

General Information
Symbol CG12374_CRM41 Species D. melanogaster
Feature type regulatory_region FlyBase ID FBsf0000436835
Collection REDfly CRMs   Associated gene(s) CG12374
Genomic Location
Chromosome (arm) 2R Sequence location 2R:8,655,980..8,656,979 [+]
Map ( GBrowse ) GBrowse View Help detailed view FBsf0000164173 FBsf0000164176 FBsf0000436835 FBsf0000236538 FBsf0000246490 FBsf0000324007 FBsf0000324008 FBsf0000199191 FBsf0000211170 FBsf0000211171 FBsf0000356111 FBsf0000356112 FBsf0000301706
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
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Length 1000
Comments
Sequence 
TTGGGTAATTGTTTGGGGGCGGGGTGGCATGCAAATGTCGACATGCCAAA
AGTTCAAAATTGCAGCTAAAATTACGGGCATCGACAGGTAAACGACTTTG
GCCAAGTTAACAAGGCACTAAAGCACAGGTTATTTCTATTTTGCCAGAAA
AGGTGGACGTAGCTTATCTCGGTGCCAAAAAAATGGTTTTCAGGATTCAT
GTTAGGTGACACCTTAAATAAAAGTACATGAAAAAATAGTAGTAAAAACA
CAAACTGCATGAGTAAATAGTCTAGCTTTGTAGCAGTTGCTGAAACAAAT
ATATGCTTCGCTTTATATGCATTTGCCCGATTGCAGCTGCAATCTGCCCA
GGATCTGGGGATCAGGATCAACCCCAGGGGCAATATATCAAACTGTTTGG
CAGCCAGCCCCGACGATCATCACCAGCAGGTGCAGGGCTCCCCTTTCTGC
TGGCCAGCAGCAGCAGACCATCAAACAGATTGGAACACGCATTTGCAGCA
TGTTTCGTGCCACGAAAGCTGCAATTAAGTTTTGTTAATTTTAATGAAGC
CACCAGGCGCATCTGCTTGCCCCGATCGACCAACAAAAAAAAAAAAAAAG
AGGGGGACTTTTGTACGGATTCAAGCAAGTCAAAAGCAATGCTCCGGGGA
GCAGCTGCTCCTATTCGCCTGGCTAGGGGTTGCTCCTTTTGGTCCTGGGC
AGCTCCTGGGTCCGCTTTTTTCTCCATTTTAATTAAGCACCCGTTGGATT
CAGCGATAGGATCTGCCACATGAAACTCTAGCCGCAAAAAATACAAATTG
GAAAGCAGACGAAAGTATTTGTACGGCAGATGGTTGTCCATTAAACGGGG
TGATTATCACATAAAAATCGTTTTAAAGTGTGCAGTCTGGCAGGGACAAT
TTTTTATGGGCAGTTAAGATACATATTTACGTAGATACAGATAAATAATT
TGATGCGCTCATTAAATGGCAATGTGAGCTTCAGGTTTAAGTTCACATTT
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Gene(s)
(targeted or local)
Allele(s)
Transcripts(s)
Polypeptide(s)
Construct
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hide Progenitors
PCR template
Primer 1
Primer 2
Comments
hide Collection Information
hide Collection: REDfly CRMs
Symbol REDfly CRMs
Source and Progenitors
Species of derivation D. melanogaster  
Strain of derivation
Vector or progenitor construct
Description
Experimentally validated, minimal functional cis-regulatory regions (CRMs) curated from the literature by REDfly (version 3.0).
(Halfon, 2012.6.19)
Additional data
Cell lines
Observed in
Not observed in
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hide Stocks Listed in FlyBase ( 0 )
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REDfly
•
hide Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym
CG12374_CRM41
 
Secondary FlyBase IDs
    hide References ( 2 )
    Research paper
    Rouault et al., 2010, Proc. Natl. Acad. Sci. U.S.A. 107(33): 14615--14620
    Genome-wide identification of cis-regulatory motifs and modules underlying gene coregulation using statistics and phylogeny. [FBrf0211646]
    Personal communication to FlyBase
    Halfon, 2012.6.19, REDfly CRMs and TFBS as mapped FlyBase features.
    REDfly CRMs and TFBS as mapped FlyBase features. [FBrf0218775]