A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Sequence Feature: RNAi_reagent

General Information
Symbol BKN40291 Species D. melanogaster
Feature type RNAi_reagent FlyBase ID FBsf0000437780
Collection HD2   Associated gene(s) CG43736
Genomic Location
Chromosome (arm) X Sequence location X:6,771,897..6,772,591 [+]
Map ( GBrowse ) GBrowse View Help detailed view FBtr0330264 FBtr0330261 FBtr0330266 FBtr0330268 FBtr0330265 FBtr0330267 FBtr0330263 FBsf0000017795 FBsf0000029857 FBsf0000029858 FBsf0000035198 FBsf0000024928 FBsf0000082069 FBsf0000083075 FBsf0000437780 FBsf0000437779 FBsf0000437969
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Description
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This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Sequence Data
Length 695
Comments
Sequence 
CAACAACAAAGCACACCCACTGACGTAATCGATCTGTCCTCCTCCCGAAG
GTCACTAGCTGCATCGGCGGCCTATTTGCAGCAACACTCGTCGGCGGTCG
CCCAGCAACAGGTAGCGGCGGCAGCGGTGGCCCAGCAACAACGTTTGGCC
GCCGTCGCCGCCCATCATGCCCAGCAGAATGGACGCAGTTCCTCGAATTC
GGGTAATGCAGGCAACTCGGCGAATGCATCGGGTAACAACAATGGGACAA
GCAACACCGGCTCCTCGGGTAATGGCTCAAACGGCAATGGCAATGCCTCC
TCGAATAGCGCCTCCATGCATCTGCAGCGCCATGCGGCACTTGCTCATGC
TGCGGCGGCGGCGAATGCGGCAGATAGTGCGCAGCGGCTGTGCGTCATAC
CCGAAATACCCACCAACAACATGAACCTGACGCCCTACAAGGTGCTCAAG
GTGTGCGTGGACAAGCATCTGGTGCCCTGCATCAACATGAAGGCCTACAA
CGAATCCGAACAGCTGATGACGCTCATCGAGTTCCAGAAGAACTTCTTCC
CCTCAGTGCCGCTGGATCATTGCAAGCGATTGATCGAGGCCCTCGGCGTG
GAGCTCTACAAGGCAAATCGGTGAGTTTTGATAACATAAGTTTGTACTTG
AAATGCATTGCTTAATCAATCCAATTTTACAGGCGACAAGTGCAG
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Gene(s)
(targeted or local)
Allele(s)
Transcripts(s)
Polypeptide(s)
Construct
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PCR template
genomic
(Pelz Oliver and Schmidt Esther, 2012)
Primer 1
CAACAACAAAGCACACCCAC
(Pelz Oliver and Schmidt Esther, 2012)
Primer 2
CTGCACTTGTCGCCTGTAAA
(Pelz Oliver and Schmidt Esther, 2012)
Comments
hide Collection Information
hide Collection: HD2HD2
Symbol HD2HD2
Source and Progenitors
Species of derivation D. melanogaster  
Strain of derivation
Vector or progenitor construct
Description
Collection of double-strand RNA fragments, used for genome-wide RNAi-knockdown assays in cell culture. RNAi targeting of transcripts annotated by the Berkeley Drosophila Genome Project and additionally predicted gene models.
 
Additional data
Cell lines
Observed in
Not observed in
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hide Stocks Listed in FlyBase ( 0 )
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hide Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym
BKN40291
(Pelz Oliver and Schmidt Esther, 2012)
Secondary FlyBase IDs
    hide References ( 1 )
    Personal communication to FlyBase
    Pelz Oliver and Schmidt Esther, 2012, additional GenomeRNAi reagent in FlyBase
    additional GenomeRNAi reagent in FlyBase [FBrf0219933]