A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Dmel\Bari1

General Information
Symbol Dmel\Bari1 Species D.melanogaster
Name Bari1 element FlyBase ID FBte0000034
Feature type natural transposable element
hide Recent Updates
Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
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FB2013_03
FB2013_02
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hide Sequences & Components
Complete element (bp)
1728
(Kaminker et al., 2002)
Terminal repeat (bp)
Reference sequence transposon_sequence_set.embl.txt.gz
Component genes
Bari1\ORF
 
hide Sequence Accessions
DDBJ/EMBL/GenBank
 
hide Sequence Ontology (SO)
Transposon type
terminal_inverted_repeat_element
(Kaminker et al., 2002, Chen and Li, 2007, Moschetti et al., 2008)
transposable_element
(Kaminker et al., 2002, )
hide Insertions & Copy Number
Copy number
and comments
5 in euchromatin of Release 3 genome annotation, of which all are full length.
(Kaminker et al., 2002)
Search for
Target Site Duplication
Size (bp)
hide Orthologs
Curated drosophilid orthologs
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Moschetti et al., 1998)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Moschetti et al., 1998)
(Biemont and Cizeron, 1999)
(Moschetti et al., 1998, )
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
(Biemont and Cizeron, 1999)
hide Comments
At least two separate clusters of Bari1 repeats exist in the h39 region.
(Marsano et al., 2003)
Bari1 elements are unstable in Charolles stock. Instability is persistent over 53 generations and appears to affect recurrent insertion sites.
(Junakovic et al., 1997)
rl undergoes polytenization in salivary gland chromosomes to a degree comparable to that of euchromatic genes, despite its deep heterochromatic location. Bari1 sequences located to the left are severely underrepresented and thus appear to be α-heterochromatin.
(Berghella and Dimitri, 1996)
By comparing methylation by Ecol\dam methylase between euchromatic and heterochromatic genes it was determined that the heterochromatic state does not prevent methylase accessibility in vivo.
(Wines et al., 1996)
Bari1 is widespread in the genus Drosophila.
(Moschetti et al., 1995)
The distribution of transposable elements within heterochromatin indicates that they are major structural components of the heterochromatin.
(Pimpinelli et al., 1995)
The 1.7kb Bari1 element makes up a middle repetitive DNA family that shows many characteristics in common with transposable elements, though its mobility has not yet been demonstrated. Most copies are homogeneously clustered with a unique location close to the centromere of the second chromosome, and all copies have the same open reading frame.
(Caizzi et al., 1993)
hide Other Information
hide Etymology
hide External Crossreferences
Sequence Crossreferences
DDBJ/EMBL/GenBank
 
Other Crossreferences
hide Synonyms & Secondary IDs ( 11 )
Reported As
Symbol Synonym
bari
(Tulin et al., 2002, Brennecke et al., 2008, Malone et al., 2009)
Bari
(Petrov et al., 2011, Slawson et al., 2006)
BARI
(Olivieri et al., 2012)
Bari1
(Chlamydas et al., 2009, Pane et al., 2011, Brennecke et al., 2007, Deloger et al., 2009, González et al., 2008, Kawamura et al., 2008, Chen and Li, 2007, Li et al., 2009, Lu and Clark, 2010, Specchia et al., 2010, González et al., 2010, Wang and Elgin, 2011, Moschetti et al., 2004)
bari-1
(Lerat et al., 2003, Vieira et al., 2002, Biemont et al., 1999, Vieira et al., 1999, Biemont and Cizeron, 1999, Vieira et al., 1999)
Bari 1
(Fortunati and Junakovic, 1999, Junakovic et al., 1997, Soriano et al., 2002)
Bari-1
(Saito et al., 2006, ffrench-Constant et al., 2006, Hong et al., 2007)
BARI1_DM
(Slawson et al., 2006)
Bari1-Jheh
(González et al., 2009)
Name Synonym
Bari1 element
 
Bari-1 element
(van Steensel and Henikoff, 2000)
Secondary FlyBase IDs
  • FBgn0005773
  • FBtp0011412
hide References ( 67 )
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hide Recent research papers ( 4 )
Olivieri et al., 2012, Mol. Cell 47(6): 954--969
The Cochaperone Shutdown Defines a Group of Biogenesis Factors Essential for All piRNA Populations in Drosophila. [FBrf0219572]
Pane et al., 2011, EMBO J. 30(22): 4601--4615
The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline. [FBrf0217070]
Petrov et al., 2011, Mol. Biol. Evol. 28(5): 1633--1644
Population genomics of transposable elements in Drosophila melanogaster. [FBrf0214125]
Wang and Elgin, 2011, Proc. Natl. Acad. Sci. U.S.A. 108(52): 21164--21169
Drosophila Piwi functions downstream of piRNA production mediating a chromatin-based transposon silencing mechanism in female germ line. [FBrf0217081]
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hide Recent reviews (0)
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