FlyBase Natural Transposon Report: Dmel\jockey

The distribution of structural variation within the jockey elements analysed approximates a negative exponential distribution starting from the 3' end of the element. Insertion site data suggest that jockey element insertion likelihood is not affected by regions of higher or lower than average denaturation temperatures.

(Kaminker et al., 2002)

Comparison of integrase/transposase domains to new elements containing the DDE signature.

(Capy et al., 1997)

jockey elements are mostly located in euchromatin.

(Terrinoni et al., 1997)

Used in an investigation to address the relationship between retrotransposons and retroviruses and the coadaptation of these retroelements to their host genomes. Results indicate retrotransposons are heterogeneous in contrast to retroviruses, suggesting different modes of evolution by slippage-like mechanisms.

(Terzian et al., 1997)

One of a class of genes with TATA-less promoters that have the conserved DPE sequence.

(Burke and Kadonaga, 1996)

The chromosomal distribution of a number of retrotransposons in an isolated population of D.melanogaster (from Ishigaki Island, Okinawa, Japan) has been determined.

(Suh et al., 1995)

Estimating the genomic numbers of transposable elements demonstrates many families of element are over-represented in heterochromatin.

(Charlesworth et al., 1994)

Element copy numbers on inversion and standard chromosomes has been determined. The copy number is significantly higher within low frequency inversions than within the corresponding standard chromosome regions.

(Sniegowski and Charlesworth, 1994)

Polymorphism of transposable elements in inbred lines has been examined: P-element, gypsy, jockey, I-element, mdg1, 412, mdg3 and 297 sites are largely stable, whereas roo and copia sites are polymorphic.

(Aleksandrova and Alexandrov, 1992)

A plasmid containing a minimal jockey promoter has been used in in vitro transcription assays to study TfIIB activity.

(Wampler and Kadonaga, 1992)

Stability of 11 transposable element families compared by Southern blotting among individuals of lines that had been subjected to 30 generations of sister sib matings. 412, roo, blood, 297, 1731 and G-element all appear stable, whereas copia, hobo, I-element, gypsy and jockey elements show instability.

(di Franco et al., 1992)

The distribution of jockey elements in a number of Drosophila species has been studied. The high degree of similarity between D.melanogaster jockey and Dfun\jockey and the absence of jockey elements from other sibling species of the D.funebris group provide evidence for the horizontal transmission of jockey into D.funebris.

(Mizrokhi and Mazo, 1990)

jockey elements are transcribed in tissue culture cells using an internal RNApolII promoter.

(Mizrokhi et al., 1988)

The genome contains several jockey elements that are deleted internally.

(Priimägi et al., 1988)

Other Information

Etymology

External Crossreferences and Linkouts ( 14 )

Crossreferences

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

Synonyms and Secondary IDs (20)

Reported As

Symbol Synonym

38B.22

(Butler, 2001, Butler et al., 2001, McGill Drosophila Genome Project, 2001.9.25)

BcDNA:AT16518

D element

(Bartolome et al., 2002)

D-element

(van Steensel et al., 2001, FlyBase, 1996-, Kimura et al., 1993)

EG:132E8.5

EG:65F1.4

(Benos, 1999.1.20)

ESTS:61B11S

HDC15785

JOCKEY

(Kapitonov and Jurka, 2003)

Jockey

(Mostoufi and Singh, 2024, Nguyen et al., 2023, Rigal et al., 2022, Lepesant et al., 2020, Mérel et al., 2020, Saint-Leandre et al., 2020, Chang et al., 2019, Korandová et al., 2018, Ortiz et al., 2015, Vagin et al., 2013, Rincon-Arano et al., 2012, Sreesankar et al., 2012, Wang and Elgin, 2011, Hamilton et al., 2009, Rho and Tang, 2009, Berezikov et al., 2001, Kaminker, 2001.11.26, Felger and Hunt, 1992)

Jockeymel

(Casacuberta and Pardue, 2003)

LINEJ1

(Czech et al., 2013)

joc

(Burke and Kadonaga, 1997, FlyBase, 1996-)

jockey

(Wierzbicki et al., 2023, Han et al., 2022, Yu et al., 2021, Rech et al., 2019, Saint-Leandre et al., 2019, Villanueva-Cañas et al., 2019, Théron et al., 2018, Ren et al., 2017, Kofler et al., 2015, Molla-Herman et al., 2015, Rahman et al., 2015, Senti et al., 2015, Wang et al., 2015, Basquin et al., 2014, Huang et al., 2014, Kim et al., 2014, Mirkovic-Hösle and Förstemann, 2014, Sytnikova et al., 2014, Cridland et al., 2013, Czech et al., 2013, Rozhkov et al., 2013, Kofler et al., 2012, Pek et al., 2012, Lerat et al., 2011, Pane et al., 2011, Petrov et al., 2011, Zhang et al., 2011, González et al., 2010, Lu and Clark, 2010, Deloger et al., 2009, Klattenhoff et al., 2009, Li et al., 2009, Ghildiyal et al., 2008, González et al., 2008, Kawamura et al., 2008, Brennecke et al., 2007, Smith et al., 2007, Alonso-Gonzalez et al., 2006, Bergman et al., 2006, Otsuna and Ito, 2006, Walser et al., 2006, Lipatov et al., 2005, Mito et al., 2005, Gause and Georgiev, 2000)

jockey element

sancho 1

(Campuzano et al., 1986)

sancho 2

(Campuzano et al., 1986)

sancho1

(FlyBase, 1996-)

sancho2

(FlyBase, 1996-)

wallaby

(FlyBase, 1996-)

Secondary FlyBase IDs

FBgn0063730
FBgn0000430
FBtp0011422
FBgn0001283
FBtp0011444

References (167)

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