Dmel\gypsy10

General Information
Symbol	Dmel\gypsy10	Species	D.melanogaster
Name	gypsy10	FlyBase ID	FBte0000351
Feature type	natural transposable element
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Sequences & Components
Complete element (bp)
Terminal repeat (bp)
Reference sequence	transposon_sequence_set.embl.txt.gz
Component genes
Sequence Accessions
	DDBJ/EMBL/GenBank
Sequence Ontology (SO)
Transposon type	LTR_retrotransposon transposable_element (Kapitonov and Jurka, 2003)
Insertions & Copy Number
Copy number and comments
Search for	All insertions of this transposon Insertions in the sequenced genome Insertions in other genomes
Target Site Duplication
Size (bp)
Orthologs
Curated drosophilid orthologs
Comments

Other Information
Etymology

External Crossreferences
Sequence Crossreferences
	DDBJ/EMBL/GenBank
Other Crossreferences

Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	Gypsy (Rozhkov et al., 2010) gypsy10 (Pane et al., 2011, Smith et al., 2007, Brennecke et al., 2007, Brennecke et al., 2008, Kawamura et al., 2008, Malone et al., 2009, Li et al., 2009, Sienski et al., 2012)
Name Synonym	gypsy10
Secondary FlyBase IDs
	FBgn0044767 FBgn0045803 FBgn0067387 FBtp0019272
References ( 13 )
Research paper	Sienski et al., 2012, Cell 151(5): 964--980 Transcriptional silencing of transposons by piwi and maelstrom and its impact on chromatin state and gene expression. [FBrf0220033] Pane et al., 2011, EMBO J. 30(22): 4601--4615 The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline. [FBrf0217070] Rozhkov et al., 2010, RNA 16(8): 1634--1645 Small RNA-based silencing strategies for transposons in the process of invading Drosophila species. [FBrf0211292] Li et al., 2009, Cell 137(3): 509--521 Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies. [FBrf0208736] Malone et al., 2009, Cell 137(3): 522--535 Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary. [FBrf0208016] Brennecke et al., 2008, Science 322(5906): 1387--1392 An epigenetic role for maternally inherited piRNAs in transposon silencing. [FBrf0206357] Kawamura et al., 2008, Nature 453(7196): 793--797 Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells. [FBrf0205455] Brennecke et al., 2007, Cell 128(6): 1089--1103 Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. [FBrf0200494] Smith et al., 2007, Science 316(5831): 1586--1591 The Release 5.1 annotation of Drosophila melanogaster heterochromatin. [FBrf0216199] Kapitonov and Jurka, 2003, Proc. Natl. Acad. Sci. U.S.A. 100(11): 6569--6574 Molecular paleontology of transposable elements in the Drosophila melanogaster genome. [FBrf0160656] Kapitonov and Jurka, 2002, Repbase Reps 2(11): 5 GYPSY10, an old family of Gypsy-like endogenous retroviruses in drosophila. [FBrf0159440] Kapitonov and Jurka, 2002, Repbase Reps 2(11): 4 GYPSY10_I is an internal portion of the GYPSY10 endogenous retrovirus - a consensus sequence. [FBrf0159439]
FlyBase analysis	FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]