Dmel\1360

General Information
Symbol	Dmel\1360	Species	D.melanogaster
Name	1360 element	FlyBase ID	FBte0000559
Feature type	natural transposable element
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Sequences & Components
Complete element (bp)	1176 1177 (Kaminker et al., 2002) 4480 (Kapitonov and Jurka, 2003)
Terminal repeat (bp)	37
Reference sequence	transposon_sequence_set.embl.txt.gz
Component genes	1360\T
Sequence Accessions
	DDBJ/EMBL/GenBank AF533772 AF540061 AJ000473 AJ441085 AL031884 AY138841 L36596 M55078 U66884 X59157 X78388 Z11734 Z11735 Z31905 Z32073 Z32074
Sequence Ontology (SO)
Transposon type	terminal_inverted_repeat_element (Kaminker et al., 2002, Sun et al., 2004, Mugnier et al., 2008, Dimitri et al., 2003, Reiss et al., 2003, Lipatov et al., 2005) transposable_element (Kaminker et al., 2002, Mugnier et al., 2008)
Insertions & Copy Number
Copy number and comments	17 (Kapitonov and Jurka, 2003) 105 in euchromatin of Release 3 genome annotation, of which 10 are full length. (Kaminker et al., 2002) >25
Search for	All insertions of this transposon Insertions in the sequenced genome Insertions in other genomes
Target Site Duplication
Size (bp)	6 7 (Linheiro and Bergman, 2012)
Orthologs
Curated drosophilid orthologs
Comments
	The "Dr. D" repetitive sequence (described in FBrf0048918) contains sequences of both INE-1 and 1360 transposable elements. (Locke et al., 1999) A 1360 element has been cloned and sequenced. It is flanked by short inverted repeats. The 1360 element is present in approximately 10-30 euchromatic sites and also in numerous heterochromatic sites (in the chromocenter, pericentric heterochromatin, the fourth chromosome and at the telomeres) in the D.melanogaster genome. At least 6 variant 1360 elements differing in the length of the central region have been detected. The 1360 element has ARS activity, similar to the P-element. (Kurenova et al., 1990) In situ hybridization to polytene chromosomes shows variable, strain-specific location in the euchromatic parts of the arms and heavy labelling of the 12E region of the X chromosome, chromosome bases (20A--20F, 40A--40F, 41A--41F, 80A--80C and 81F), the chromocentre and chromosome 4. (Kholodilov et al., 1988)
Other Information
Etymology

External Crossreferences
Sequence Crossreferences
	DDBJ/EMBL/GenBank AF533772 AF540061 AJ000473 AJ441085 AL031884 AY138841 L36596 M55078 U66884 X59157 X78388 Z11734 Z11735 Z31905 Z32073 Z32074
Other Crossreferences

Synonyms & Secondary IDs ( 31 )
Reported As
Symbol Synonym	1360 (Riddle et al., 2008, Grewal and Elgin, 2007, Huisinga et al., 2007, Bhadra et al., 2007, Linheiro and Bergman, 2012, De Lucia et al., 2005, Gunawardane et al., 2007, Pane et al., 2011, Petrov et al., 2011, Boussy and Itoh, 2004, Mito et al., 2005, Haynes et al., 2006, Smith et al., 2007, Zhang and Pugh, 2011, Brennecke et al., 2007, Riddle et al., 2008, Deloger et al., 2009, Brower-Toland et al., 2007, Mugnier et al., 2008, Marzo et al., 2008, Dimitri et al., 2003, González et al., 2008, Shi et al., 2008, Kawamura et al., 2008, Hamilton et al., 2009, Lipatov et al., 2005, Chen and Li, 2007, Li et al., 2009, Otsuna and Ito, 2006, de Wit et al., 2005, Lu and Clark, 2010, Bergman et al., 2006, Méndez-Lago et al., 2011, Slawson et al., 2006, Moshkovich and Lei, 2010, González et al., 2010, Wang and Elgin, 2011, Sienski et al., 2012) 1360/Hoppel (Myster et al., 2004) 1360 element (Sun et al., 2004) anon-CH(3)336 CR31011 CR31276 CR31553 CR40447 (FlyBase Genome Annotators, 2002-2003) Dm1360 DmHoppel (Marsano et al., 2003) Dr. D (Locke et al., 2000) EG:23E12.4 hopel (Leibovich et al., 1991, Leibovich, 1991) hoppel (Talbert and Henikoff, 2006, Kavi et al., 2005, Hodgetts, 2004, Lerat et al., 2003, Maggert and Golic, 2002, Tulin et al., 2002, Aravin et al., 2001, Wallrath, 2000, Gvozdev et al., 2000, van Steensel et al., 2001, Aravin et al., 2000, Bejarano and Gonzalez, 1999, Locke et al., 1999, Kurenova, 1994.5.6, Spradling et al., 1999, Cryderman et al., 1999, Dimitri et al., 1999, Cryderman et al., 1998, Wallrath et al., 1998, Deak et al., 1997, Kurenova et al., 1990, FlyBase, 1996-, Bhadra et al., 2007, Gvozdev et al., 2005, Steinemann and Steinemann, 2005, Boussy and Itoh, 2004) Hoppel (Tritto et al., 2003, Rizzon et al., 2002, Pardue and Debaryshe, 2000, Locke et al., 2000, Locke et al., 1999, Locke et al., 1998, Almeida Coelho and Sunkel, 1995, FlyBase, 1996-, Saito et al., 2006) hoppel(1360) (Zaratiegui, 2007) Hoppel-like (Marsano et al., 2003) hoppel-like (Sunkel, 1997.7.15) ProtoP (Kapitonov and Jurka, 2003, Brennecke et al., 2008, Malone et al., 2009) protop (Kapitonov and Jurka, 1997-) PROTOP (Slawson et al., 2006, Olivieri et al., 2012) PROTOP_A (Slawson et al., 2006, Zhou et al., 2009, Olivieri et al., 2012) ProtoP_B (Kapitonov and Jurka, 2003) protop_b (Kapitonov and Jurka, 1997-) PROTOP_B (Slawson et al., 2006, Zhou et al., 2009, Olivieri et al., 2012) protoP-A (Handler et al., 2011) PROTOP B (Brennecke et al., 2007) protoP B (Brennecke et al., 2008) ProtoPB (Malone et al., 2009)
Name Synonym	1360 (Mugnier et al., 2008, Lipatov et al., 2005) 1360 element 1360 transposon (Sun et al., 2004) Hoppel (Reiss et al., 2003) terminal_inverted_repeat_element (Chen and Li, 2007)
Secondary FlyBase IDs
	FBgn0004180 FBgn0005673 FBgn0013399 FBgn0051011 FBgn0051276 FBgn0051553 FBgn0058447 FBtp0011398
References ( 111 )

Generate a list of	All references relating to this natural transposable element ( 111 )

List References by type	Research paper ( 79 ) Supplementary material ( 1 ) Review ( 10 ) Personal communication to FlyBase ( 6 ) Abstract ( 8 ) FlyBase analysis ( 3 ) Letter ( 2 ) DNA/RNA sequence record ( 2 )
Recent research papers ( 10 )
	Linheiro and Bergman, 2012, PLoS ONE 7(2): e30008 Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster. [FBrf0217478] Olivieri et al., 2012, Mol. Cell 47(6): 954--969 The Cochaperone Shutdown Defines a Group of Biogenesis Factors Essential for All piRNA Populations in Drosophila. [FBrf0219572] Sienski et al., 2012, Cell 151(5): 964--980 Transcriptional silencing of transposons by piwi and maelstrom and its impact on chromatin state and gene expression. [FBrf0220033] Flutre et al., 2011, PLoS ONE 6(1): e16526 Considering transposable element diversification in de novo annotation approaches. [FBrf0213014] Handler et al., 2011, EMBO J. 30(19): 3977--3993 A systematic analysis of Drosophila TUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors. [FBrf0216344] Méndez-Lago et al., 2011, Mol. Biol. Evol. 28(7): 1967--1971 A Large Palindrome With Interchromosomal Gene Duplications in the Pericentromeric Region of the D. melanogaster Y Chromosome. [FBrf0214341] Pane et al., 2011, EMBO J. 30(22): 4601--4615 The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline. [FBrf0217070] Petrov et al., 2011, Mol. Biol. Evol. 28(5): 1633--1644 Population genomics of transposable elements in Drosophila melanogaster. [FBrf0214125] Wang and Elgin, 2011, Proc. Natl. Acad. Sci. U.S.A. 108(52): 21164--21169 Drosophila Piwi functions downstream of piRNA production mediating a chromatin-based transposon silencing mechanism in female germ line. [FBrf0217081] Zhang and Pugh, 2011, PLoS ONE 6(6): e20511 Genomic Organization of H2Av Containing Nucleosomes in Drosophila Heterochromatin. [FBrf0214284] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...