Dmel\Rt1b

General Information
Symbol	Dmel\Rt1b	Species	D.melanogaster
Name	Rt1b	FlyBase ID	FBte0000603
Feature type	natural transposable element
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Sequences & Components
Complete element (bp)	5171 (Busseau, 2000.10.18) 5183 (Kaminker et al., 2002)
Terminal repeat (bp)
Reference sequence	transposon_sequence_set.embl.txt.gz
Component genes	Rt1b\gag Rt1b\RTase
Sequence Accessions
	DDBJ/EMBL/GenBank AE002590 AE003166 AF281636 AF281637 AF281638 AF281639 AF281640 AF281641 AF281642 AF281643
Sequence Ontology (SO)
Transposon type	non_LTR_retrotransposon (Kaminker et al., 2002, Busseau, 2000.10.18, Mugnier et al., 2008) transposable_element (Kaminker et al., 2002, Mugnier et al., 2008)
Insertions & Copy Number
Copy number and comments	37 in euchromatin of Release 3 genome annotation, of which 5 are full length. (Kaminker et al., 2002)
Search for	All insertions of this transposon Insertions in the sequenced genome Insertions in other genomes
Target Site Duplication
Size (bp)
Orthologs
Curated drosophilid orthologs
Comments
	Rt1b elements are often inserted within or very close to (CA)_n arrays. (Busseau et al., 2001)
Other Information
Etymology

External Crossreferences
Sequence Crossreferences
	DDBJ/EMBL/GenBank AE002590 AE003166 AF281636 AF281637 AF281638 AF281639 AF281640 AF281641 AF281642 AF281643
Other Crossreferences

Synonyms & Secondary IDs ( 13 )
Reported As
Symbol Synonym	CG3549 (Han et al., 2003, Stempfl et al., 2002, Misra, 2001.7.31, ) CG12574 CG12614 (Misra, 2001.8.16, ) CG15039 (Misra, 2001.7.31, ) CG18225 (Misra, 2001.8.16, ) DMRT1B (Kapitonov and Jurka, 2003, Gunawardane et al., 2007) Rt1 (Petrov et al., 2011) Rt1b (FlyBase, 1992-, Weber et al., 2008, Pane et al., 2011, Smith et al., 2007, Brennecke et al., 2007, Ghildiyal et al., 2008, Deloger et al., 2009, González et al., 2008, Kawamura et al., 2008, Hamilton et al., 2009, Anand and Kai, 2012, Li et al., 2009, Bergman et al., 2006, González et al., 2010, Handler et al., 2011, Sienski et al., 2012) RT1B (Brennecke et al., 2008, Malone et al., 2009) Rt1b{} (Gou et al., 2010) Rtb1 (Mugnier et al., 2008) Waldo-A (Blumenstiel et al., 2002, Berezikov et al., 2001, Misra, 2001.8.16, Misra, 2001.8.16, Misra, 2001.8.16, Misra, 2001.7.30, Misra, 2001.7.31, Misra, 2001.7.31, Misra, 2001.7.31, Berezikov et al., 2000, Busseau et al., 2001, Busseau, 2000.10.18, ) WaldoA (Rizzon et al., 2002)
Name Synonym	Rt1b Rtb1 (Mugnier et al., 2008)
Secondary FlyBase IDs
	FBgn0030957 FBgn0032954 FBgn0033011 FBgn0039981 FBgn0040015 FBgn0042682 FBtp0017046
References ( 47 )

Generate a list of	All references relating to this natural transposable element ( 47 )

List References by type	Research paper ( 32 ) Supplementary material ( 1 ) Personal communication to FlyBase ( 11 ) Abstract ( 1 ) FlyBase analysis ( 1 ) Curated genome annotation ( 1 )
Recent research papers ( 5 )
	Anand and Kai, 2012, EMBO J. 31(4): 870--882 The tudor domain protein Kumo is required to assemble the nuage and to generate germline piRNAs in Drosophila. [FBrf0217541] Sienski et al., 2012, Cell 151(5): 964--980 Transcriptional silencing of transposons by piwi and maelstrom and its impact on chromatin state and gene expression. [FBrf0220033] Handler et al., 2011, EMBO J. 30(19): 3977--3993 A systematic analysis of Drosophila TUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors. [FBrf0216344] Pane et al., 2011, EMBO J. 30(22): 4601--4615 The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline. [FBrf0217070] Petrov et al., 2011, Mol. Biol. Evol. 28(5): 1633--1644 Population genomics of transposable elements in Drosophila melanogaster. [FBrf0214125] Show all research papers ...