Dmel\transib1

General Information
Symbol	Dmel\transib1	Species	D.melanogaster
Name	transib1	FlyBase ID	FBte0000626
Feature type	natural transposable element
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Sequences & Components
Complete element (bp)	2167 (Kaminker et al., 2002, Kapitonov and Jurka, 2003)
Terminal repeat (bp)	43 (Kapitonov and Jurka, 2003)
Reference sequence	transposon_sequence_set.embl.txt.gz
Component genes
Sequence Accessions
	DDBJ/EMBL/GenBank
Sequence Ontology (SO)
Transposon type	terminal_inverted_repeat_element (Kaminker et al., 2002, Kapitonov and Jurka, 1997-, Kapitonov and Jurka, 2003) transposable_element (Kaminker et al., 2002, Kapitonov and Jurka, 1997-, Kapitonov and Jurka, 2003)
Insertions & Copy Number
Copy number and comments	2 in euchromatin of Release 3 genome annotation, of which zero are full length. (Kaminker et al., 2002) 5 (Kapitonov and Jurka, 2003)
Search for	All insertions of this transposon Insertions in the sequenced genome Insertions in other genomes
Target Site Duplication
Size (bp)
Orthologs
Curated drosophilid orthologs
Comments

Other Information
Etymology

External Crossreferences
Sequence Crossreferences
	DDBJ/EMBL/GenBank
Other Crossreferences

Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	transib (Petrov et al., 2011) transib1 (FlyBase, 1992-, Pane et al., 2011, Kawamura et al., 2008, Bergman et al., 2006)
Name Synonym	Transib1 (Kapitonov and Jurka, 2005) transib1
Secondary FlyBase IDs
	FBgn0063372 FBtp0017076
References ( 11 )
Research paper	Pane et al., 2011, EMBO J. 30(22): 4601--4615 The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline. [FBrf0217070] Petrov et al., 2011, Mol. Biol. Evol. 28(5): 1633--1644 Population genomics of transposable elements in Drosophila melanogaster. [FBrf0214125] Kawamura et al., 2008, Nature 453(7196): 793--797 Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells. [FBrf0205455] Bergman et al., 2006, Genome Biol. 7(11): R112 Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome. [FBrf0193410] Kapitonov and Jurka, 2005, PLoS Biol. 3(6): e181 RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons. [FBrf0188423] Dimitri et al., 2003, Mol. Biol. Evol. 20(4): 503--512 Colonization of heterochromatic genes by transposable elements in Drosophila. [FBrf0159196] Kapitonov and Jurka, 2003, Proc. Natl. Acad. Sci. U.S.A. 100(11): 6569--6574 Molecular paleontology of transposable elements in the Drosophila melanogaster genome. [FBrf0160656] Kaminker et al., 2002, Genome Biol. 3(12): RESEARCH0084 The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective. [FBrf0155828]
Personal communication to FlyBase	Ashburner, 2002.8.15, te updates. te updates. [FBrf0151627] Kapitonov and Jurka, 1997-, A reference collection of Drosophila repetitive sequences. (Computer file) A reference collection of Drosophila repetitive sequences. (Computer file) [FBrf0151607]
FlyBase analysis	FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]