Dmel\Rt1c

General Information
Symbol	Dmel\Rt1c	Species	D.melanogaster
Name	Rt1c	FlyBase ID	FBte0000666
Feature type	natural transposable element
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Sequences & Components
Complete element (bp)	5443 (Kaminker et al., 2002)
Terminal repeat (bp)
Reference sequence	transposon_sequence_set.embl.txt.gz
Component genes
Sequence Accessions
	DDBJ/EMBL/GenBank
Sequence Ontology (SO)
Transposon type	non_LTR_retrotransposon (Kaminker et al., 2002, Kapitonov and Jurka, 1997-) transposable_element (Kaminker et al., 2002, Kapitonov and Jurka, 1997-)
Insertions & Copy Number
Copy number and comments	17 in euchromatin of Release 3 genome annotation, of which 1 is full length. (Kaminker et al., 2002)
Search for	All insertions of this transposon Insertions in the sequenced genome Insertions in other genomes
Target Site Duplication
Size (bp)
Orthologs
Curated drosophilid orthologs
Comments

Other Information
Etymology

External Crossreferences
Sequence Crossreferences
	DDBJ/EMBL/GenBank
Other Crossreferences

Synonyms & Secondary IDs ( 7 )
Reported As
Symbol Synonym	CG12571 (Luschnig, 2003.12.17, ) CG12629 (Luschnig, 2003.12.17, ) CG17586 (Luschnig, 2003.12.17, ) DMRT1C (Kapitonov and Jurka, 2003, Kapitonov and Jurka, 1997-, Gunawardane et al., 2007, Olivieri et al., 2012) Rt1 (Petrov et al., 2011) Rt1c (FlyBase, 1992-, Pane et al., 2011, Deloger et al., 2009, Kawamura et al., 2008, Hamilton et al., 2009, Li et al., 2009, Otsuna and Ito, 2006, Bergman et al., 2006) RT1C (Ponce, 2007)
Name Synonym	Rt1c
Secondary FlyBase IDs
	FBgn0032984 FBgn0033001 FBgn0040016 FBgn0063467 FBtp0017047
References ( 20 )
Research paper	Olivieri et al., 2012, Mol. Cell 47(6): 954--969 The Cochaperone Shutdown Defines a Group of Biogenesis Factors Essential for All piRNA Populations in Drosophila. [FBrf0219572] Pane et al., 2011, EMBO J. 30(22): 4601--4615 The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline. [FBrf0217070] Petrov et al., 2011, Mol. Biol. Evol. 28(5): 1633--1644 Population genomics of transposable elements in Drosophila melanogaster. [FBrf0214125] Nagao et al., 2010, RNA 16(12): 2503--2515 Biogenesis pathways of piRNAs loaded onto AGO3 in the Drosophila testis. [FBrf0212366] Deloger et al., 2009, Gene 439(1-2): 55--62 Identification of expressed transposable element insertions in the sequenced genome of Drosophila melanogaster. [FBrf0207990] Hamilton et al., 2009, RNA 15(2): 200--207 A bioinformatics search pipeline, RNA2DSearch, identifies RNA localization elements in Drosophila retrotransposons. [FBrf0206610] Li et al., 2009, Cell 137(3): 509--521 Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies. [FBrf0208736] Kawamura et al., 2008, Nature 453(7196): 793--797 Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells. [FBrf0205455] Ponce, 2007, Genetica 131(3): 315--324 The use of a non-LTR element to date the formation of the Sdic gene cluster. [FBrf0201563] Bergman et al., 2006, Genome Biol. 7(11): R112 Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome. [FBrf0193410] Otsuna and Ito, 2006, J. Comp. Neurol. 497(6): 928--958 Systematic analysis of the visual projection neurons of Drosophila melanogaster. I. Lobula-specific pathways. [FBrf0193607] Aravin et al., 2003, Dev. Cell 5(2): 337--350 The small RNA profile during Drosophila melanogaster development. [FBrf0162058] Kapitonov and Jurka, 2003, Proc. Natl. Acad. Sci. U.S.A. 100(11): 6569--6574 Molecular paleontology of transposable elements in the Drosophila melanogaster genome. [FBrf0160656] Kaminker et al., 2002, Genome Biol. 3(12): RESEARCH0084 The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective. [FBrf0155828]
Supplementary material	Gunawardane et al., 2007, Supporting online material. Supporting online material. [FBrf0200143]
Personal communication to FlyBase	Luschnig, 2003.12.17, Existence-uncertain genes. Existence-uncertain genes. [FBrf0173248] Ashburner, 2002.8.15, te updates. te updates. [FBrf0151627] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] Kapitonov and Jurka, 1997-, A reference collection of Drosophila repetitive sequences. (Computer file) A reference collection of Drosophila repetitive sequences. (Computer file) [FBrf0151607]
FlyBase analysis	FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]