Dmel\rover

General Information
Symbol	Dmel\rover	Species	D.melanogaster
Name	rover	FlyBase ID	FBte0000692
Feature type	natural transposable element
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Sequences & Components
Complete element (bp)	7318 (Kaminker et al., 2002)
Terminal repeat (bp)
Reference sequence	transposon_sequence_set.embl.txt.gz
Component genes	rover\env rover\gag rover\pol
Sequence Accessions
	DDBJ/EMBL/GenBank AF492764
Sequence Ontology (SO)
Transposon type	LTR_retrotransposon (Kaminker et al., 2002, Kaminker, 2002.3.15, Mugnier et al., 2008, Lipatov et al., 2005) transposable_element (Kaminker et al., 2002, Mugnier et al., 2008)
Insertions & Copy Number
Copy number and comments	6 in euchromatin of Release 3 genome annotation, of which 3 are full length. (Kaminker et al., 2002)
Search for	All insertions of this transposon Insertions in the sequenced genome Insertions in other genomes
Target Site Duplication
Size (bp)	4 (Linheiro and Bergman, 2012)
Orthologs
Curated drosophilid orthologs	Dsim\rover (Vieira et al., 1999)
Comments

Other Information
Etymology

External Crossreferences
Sequence Crossreferences
	DDBJ/EMBL/GenBank AF492764
Other Crossreferences

Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	pregun (Geyer et al., 1990, FlyBase, 1996-) prygun-element (FlyBase, 1996-) rover (Saito et al., 2006, Ganko et al., 2006, Nefedova and Kim, 2007, Linheiro and Bergman, 2012, Pane et al., 2011, Minervini et al., 2007, Gunawardane et al., 2007, Petrov et al., 2011, Smith et al., 2007, Brennecke et al., 2007, Kawamura et al., 2008, Mugnier et al., 2008, Brennecke et al., 2008, Deloger et al., 2009, Bergman and Bensasson, 2007, Lipatov et al., 2005, Malone et al., 2009, Li et al., 2009, Lu and Clark, 2010, Palomera-Sanchez et al., 2010) Rover (Lau et al., 2009, Phalke et al., 2009) ROVER (Brower-Toland et al., 2009) rover-element (FlyBase, 1996-)
Name Synonym	rover (Mugnier et al., 2008, Lipatov et al., 2005)
Secondary FlyBase IDs
	FBgn0004196 FBgn0061485 FBtp0011458 FBtp0017075
References ( 36 )

Generate a list of	All references relating to this natural transposable element ( 36 )

List References by type	Research paper ( 30 ) Supplementary material ( 1 ) Review ( 1 ) Personal communication to FlyBase ( 1 ) FlyBase analysis ( 2 ) DNA/RNA sequence record ( 1 )
Recent research papers ( 3 )
	Linheiro and Bergman, 2012, PLoS ONE 7(2): e30008 Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster. [FBrf0217478] Pane et al., 2011, EMBO J. 30(22): 4601--4615 The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline. [FBrf0217070] Petrov et al., 2011, Mol. Biol. Evol. 28(5): 1633--1644 Population genomics of transposable elements in Drosophila melanogaster. [FBrf0214125] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...