FlyBase Natural Transposon Report: Dmel\S2

General Information

Symbol

Species

D. melanogaster

Feature type

natural_transposable_element

FlyBase ID

FBte0000709

Sequences and Components

Complete element (bp)

1735

(Kaminker et al., 2002)

Terminal repeat (bp)

Reference sequence

transposon_sequence_set.fa.gz transposon_sequence_set.gff.gz

Component genes

Sequence Accessions

Sequence Ontology (SO)

Transposon type

LTR_retrotransposon

(Lipatov et al., 2005, Kapitonov and Jurka, 1997-)

terminal_inverted_repeat_element

(Lipatov et al., 2005, Kaminker et al., 2002)

transposable_element

(Kaminker et al., 2002, Kapitonov and Jurka, 1997-)

Insertions and Copy Number

Copy number and comments

13 in euchromatin of Release 3 genome annotation, of which zero are full length.

(Kaminker et al., 2002)

Search for

Target Site Duplication

Size (bp)

Orthologs

Curated drosophilid orthologs

Comments

Other Information

Etymology

External Crossreferences and Linkouts ( 0 )

Synonyms and Secondary IDs (2)

Reported As

Symbol Synonym

(Bologa et al., 2023, Wierzbicki et al., 2023, Rigal et al., 2022, Kofler et al., 2015, Petrov et al., 2011, Deloger et al., 2009, Kawamura et al., 2008, Lipatov et al., 2005)

S2_DM

(Kapitonov and Jurka, 1997-)

Secondary FlyBase IDs

FBgn0063466
FBtp0017048

References (13)

Report Sections

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