Dmel\transib3

General Information
Symbol	Dmel\transib3	Species	D.melanogaster
Name	transib3	FlyBase ID	FBte0000725
Feature type	natural transposable element
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Sequences & Components
Complete element (bp)	2883 (Kaminker et al., 2002, Kapitonov and Jurka, 2003)
Terminal repeat (bp)	45 (Kapitonov and Jurka, 2003)
Reference sequence	transposon_sequence_set.embl.txt.gz
Component genes
Sequence Accessions
	DDBJ/EMBL/GenBank
Sequence Ontology (SO)
Transposon type	terminal_inverted_repeat_element (Kaminker et al., 2002, Kapitonov and Jurka, 1997-, Kapitonov and Jurka, 2003, Lipatov et al., 2005) transposable_element (Kaminker et al., 2002, Kapitonov and Jurka, 1997-, Kapitonov and Jurka, 2003)
Insertions & Copy Number
Copy number and comments	7 in euchromatin of Release 3 genome annotation, of which zero are full length. (Kaminker et al., 2002) 8 (Kapitonov and Jurka, 2003)
Search for	All insertions of this transposon Insertions in the sequenced genome Insertions in other genomes
Target Site Duplication
Size (bp)
Orthologs
Curated drosophilid orthologs
Comments

Other Information
Etymology

External Crossreferences
Sequence Crossreferences
	DDBJ/EMBL/GenBank
Other Crossreferences

Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	transib (Petrov et al., 2011) transib3 (FlyBase, 1992-, Deloger et al., 2009, Ghildiyal et al., 2008, Kawamura et al., 2008, Lipatov et al., 2005, Sienski et al., 2012)
Name Synonym	Transib3 (Kapitonov and Jurka, 2005) transib3 (Lipatov et al., 2005)
Secondary FlyBase IDs
	FBgn0063370 FBtp0017078
References ( 12 )
Research paper	Sienski et al., 2012, Cell 151(5): 964--980 Transcriptional silencing of transposons by piwi and maelstrom and its impact on chromatin state and gene expression. [FBrf0220033] Petrov et al., 2011, Mol. Biol. Evol. 28(5): 1633--1644 Population genomics of transposable elements in Drosophila melanogaster. [FBrf0214125] Deloger et al., 2009, Gene 439(1-2): 55--62 Identification of expressed transposable element insertions in the sequenced genome of Drosophila melanogaster. [FBrf0207990] Ghildiyal et al., 2008, Science 320(5879): 1077--1081 Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells. [FBrf0205170] Kawamura et al., 2008, Nature 453(7196): 793--797 Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells. [FBrf0205455] Kapitonov and Jurka, 2005, PLoS Biol. 3(6): e181 RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons. [FBrf0188423] Lipatov et al., 2005, BMC Biol. 3: 24 Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome. [FBrf0189752] Kapitonov and Jurka, 2003, Proc. Natl. Acad. Sci. U.S.A. 100(11): 6569--6574 Molecular paleontology of transposable elements in the Drosophila melanogaster genome. [FBrf0160656] Kaminker et al., 2002, Genome Biol. 3(12): RESEARCH0084 The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective. [FBrf0155828]
Personal communication to FlyBase	Ashburner, 2002.8.15, te updates. te updates. [FBrf0151627] Kapitonov and Jurka, 1997-, A reference collection of Drosophila repetitive sequences. (Computer file) A reference collection of Drosophila repetitive sequences. (Computer file) [FBrf0151607]
FlyBase analysis	FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]