FlyBase Natural Transposon Report: Dmel\Porto1

General Information

Symbol

Porto1

Species

D. melanogaster

Feature type

natural_transposable_element

FlyBase ID

FBte0000791

Sequences and Components

Complete element (bp)

Terminal repeat (bp)

Reference sequence

transposon_sequence_set.fa.gz transposon_sequence_set.gff.gz

Component genes

Sequence Accessions

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

Sequence Ontology (SO)

Transposon type

non_LTR_retrotransposon

(Kapitonov and Jurka, 2003)

Insertions and Copy Number

Copy number and comments

Search for

Target Site Duplication

Size (bp)

Orthologs

Curated drosophilid orthologs

Comments

Porto1 is an AT-rich repeated sequence that localises close to the centromere of chromosome 2 in D.melanogaster.

(Coelho et al., 1996)

Other Information

Etymology

External Crossreferences and Linkouts ( 2 )

Crossreferences

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

Synonyms and Secondary IDs (8)

Reported As

Symbol Synonym

DOC5

(Rigal et al., 2022, Olivieri et al., 2012)

DOC5_DM

(Gunawardane et al., 2007)

Doc5

(Berloco et al., 2021, Sytnikova et al., 2014, FlyBase, 1996-)

Doc5-element

Porto 1

Porto-1

(Marsano et al., 2003, Coelho et al., 1996, Sunkel, 1996.4.25)

Porto1

(Wierzbicki et al., 2023, Kofler et al., 2012, Pane et al., 2011, Li et al., 2009, Kawamura et al., 2008)

doc5

(Ohtani et al., 2013)

Secondary FlyBase IDs

FBgn0067556
FBgn0015786
FBtp0019260

References (19)

Report Sections

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