Dmel\accord

General Information
Symbol	Dmel\accord	Species	D.melanogaster
Name	accord	FlyBase ID	FBte0000956
Feature type	natural transposable element
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Sequences & Components
Complete element (bp)	7404 (Kaminker et al., 2002)
Terminal repeat (bp)
Reference sequence	transposon_sequence_set.embl.txt.gz
Component genes
Sequence Accessions
	DDBJ/EMBL/GenBank
Sequence Ontology (SO)
Transposon type	LTR_retrotransposon (Kaminker et al., 2002, Kapitonov and Jurka, 1997-, Mugnier et al., 2008) transposable_element (Kaminker et al., 2002, Kapitonov and Jurka, 1997-, Mugnier et al., 2008)
Insertions & Copy Number
Copy number and comments	1 in euchromatin of Release 3 genome annotation. (Kaminker et al., 2002)
Search for	All insertions of this transposon Insertions in the sequenced genome Insertions in other genomes
Target Site Duplication
Size (bp)	4 (Linheiro and Bergman, 2012)
Orthologs
Curated drosophilid orthologs
Comments

Other Information
Etymology

External Crossreferences
Sequence Crossreferences
	DDBJ/EMBL/GenBank
Other Crossreferences

Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	Accord (McCart and ffrench-Constant, 2005, ffrench-Constant et al., 2004, Kapitonov and Jurka, 2003, Schlenke and Begun, 2003, Daborn et al., 2003, ffrench-Constant et al., 2006, Catania et al., 2004, Schmidt et al., 2010, Wang and Elgin, 2011) accord (FlyBase, 1992-, Linheiro and Bergman, 2012, Pane et al., 2011, Minervini et al., 2007, Petrov et al., 2011, Brennecke et al., 2007, Mugnier et al., 2008, Liu et al., 2011, Nefedova et al., 2011, Brennecke et al., 2008, Deloger et al., 2009, Kawamura et al., 2008, Malone et al., 2009, Li et al., 2009) ACCORD (Brower-Toland et al., 2009, Olivieri et al., 2012)
Name Synonym	accord (Mugnier et al., 2008)
Secondary FlyBase IDs
	FBgn0063447 FBtp0017053
References ( 31 )

Generate a list of	All references relating to this natural transposable element ( 31 )

List References by type	Research paper ( 23 ) Review ( 2 ) Personal communication to FlyBase ( 2 ) Abstract ( 3 ) FlyBase analysis ( 1 )
Recent research papers ( 7 )
	Linheiro and Bergman, 2012, PLoS ONE 7(2): e30008 Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster. [FBrf0217478] Olivieri et al., 2012, Mol. Cell 47(6): 954--969 The Cochaperone Shutdown Defines a Group of Biogenesis Factors Essential for All piRNA Populations in Drosophila. [FBrf0219572] Liu et al., 2011, Development 138(9): 1863--1873 PAPI, a novel TUDOR-domain protein, complexes with AGO3, ME31B and TRAL in the nuage to silence transposition. [FBrf0213491] Nefedova et al., 2011, Virus Genes 42(2): 297--306 Integration specificity of LTR-retrotransposons and retroviruses in the Drosophila melanogaster genome. [FBrf0213545] Pane et al., 2011, EMBO J. 30(22): 4601--4615 The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline. [FBrf0217070] Petrov et al., 2011, Mol. Biol. Evol. 28(5): 1633--1644 Population genomics of transposable elements in Drosophila melanogaster. [FBrf0214125] Wang and Elgin, 2011, Proc. Natl. Acad. Sci. U.S.A. 108(52): 21164--21169 Drosophila Piwi functions downstream of piRNA production mediating a chromatin-based transposon silencing mechanism in female germ line. [FBrf0217081] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...