Dmel\Tabor

General Information
Symbol	Dmel\Tabor	Species	D.melanogaster
Name	Tabor	FlyBase ID	FBte0000974
Feature type	natural transposable element
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Sequences & Components
Complete element (bp)	7345 (Kaminker et al., 2002, Costas et al., 2001)
Terminal repeat (bp)	506 (Costas et al., 2001)
Reference sequence	transposon_sequence_set.embl.txt.gz
Component genes	Tabor\gag (Naveira, 2001.9.21, Costas et al., 2001) Tabor\pol (Naveira, 2001.9.21, Costas et al., 2001) Tabor\sORF (Naveira, 2001.9.21, Costas et al., 2001)
Sequence Accessions
	DDBJ/EMBL/GenBank AY113457 BI240162
Sequence Ontology (SO)
Transposon type	LTR_retrotransposon (Kaminker et al., 2002, Costas et al., 2001, Mugnier et al., 2008) transposable_element (Kaminker et al., 2002, Naveira, 2001.9.21, Costas et al., 2001, Mugnier et al., 2008)
Insertions & Copy Number
Copy number and comments	3 in euchromatin of Release 3 genome annotation, of which 2 are full length. (Kaminker et al., 2002)
Search for	All insertions of this transposon Insertions in the sequenced genome Insertions in other genomes
Target Site Duplication
Size (bp)	4 (Linheiro and Bergman, 2012, Costas et al., 2001)
Orthologs
Curated drosophilid orthologs
Comments
	Expression is enriched in embryonic gonads. (Shigenobu et al., 2006) The Tabor element contains a short open reading frame (sORF) within the 5' leader region and two long ORFs which are out of phase by -1. (Costas et al., 2001)
Other Information
Etymology

External Crossreferences
Sequence Crossreferences
	DDBJ/EMBL/GenBank AY113457 BI240162
Other Crossreferences

Synonyms & Secondary IDs ( 8 )
Reported As
Symbol Synonym	BcDNA:RE36839 pilgrim (Lerat et al., 2003) Pilgrim (Rizzon et al., 2002, Naveira, 2001.9.21, Costas et al., 2001, ) Tabor (FlyBase, 1992-, Shigenobu et al., 2006, Ganko et al., 2006, Linheiro and Bergman, 2012, Pane et al., 2011, Petrov et al., 2011, Brennecke et al., 2007, Kawamura et al., 2008, Czech et al., 2008, Deloger et al., 2009, Bergman and Bensasson, 2007, Li et al., 2009, Sienski et al., 2012) tabor (Shigenobu et al., 2006, Mugnier et al., 2008, Brennecke et al., 2008, Malone et al., 2009, Zamparini et al., 2011) TABOR (Brower-Toland et al., 2009, Zhou et al., 2009) TABOR_I (Gunawardane et al., 2007) wolfman (Naveira, 2001.9.21, Bowen and McDonald, 2001)
Name Synonym	tabor (Mugnier et al., 2008) Tabor (Klattenhoff et al., 2009, )
Secondary FlyBase IDs
	FBgn0045970 FBgn0063027 FBtp0017051
References ( 35 )

Generate a list of	All references relating to this natural transposable element ( 35 )

List References by type	Research paper ( 27 ) Supplementary material ( 1 ) Personal communication to FlyBase ( 5 ) FlyBase analysis ( 2 )
Recent research papers ( 6 )
	Linheiro and Bergman, 2012, PLoS ONE 7(2): e30008 Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster. [FBrf0217478] Sienski et al., 2012, Cell 151(5): 964--980 Transcriptional silencing of transposons by piwi and maelstrom and its impact on chromatin state and gene expression. [FBrf0220033] Handler et al., 2011, EMBO J. 30(19): 3977--3993 A systematic analysis of Drosophila TUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors. [FBrf0216344] Pane et al., 2011, EMBO J. 30(22): 4601--4615 The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline. [FBrf0217070] Petrov et al., 2011, Mol. Biol. Evol. 28(5): 1633--1644 Population genomics of transposable elements in Drosophila melanogaster. [FBrf0214125] Zamparini et al., 2011, Development 138(18): 4039--4050 Vreteno, a gonad-specific protein, is essential for germline development and primary piRNA biogenesis in Drosophila. [FBrf0214783] Show all research papers ...