Dmel\jockey2

General Information
Symbol	Dmel\jockey2	Species	D.melanogaster
Name	jockey2	FlyBase ID	FBte0001092
Feature type	natural transposable element
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Sequences & Components
Complete element (bp)	3428 (Kaminker et al., 2002)
Terminal repeat (bp)
Reference sequence	transposon_sequence_set.embl.txt.gz
Component genes
Sequence Accessions
	DDBJ/EMBL/GenBank
Sequence Ontology (SO)
Transposon type	non_LTR_retrotransposon (Kaminker et al., 2002, Kapitonov and Jurka, 1997-, Chen and Li, 2007) transposable_element (Kaminker et al., 2002, Kapitonov and Jurka, 1997-)
Insertions & Copy Number
Copy number and comments	10 in euchromatin of Release 3 genome annotation, of which zero are full length. (Kaminker et al., 2002)
Search for	All insertions of this transposon Insertions in the sequenced genome Insertions in other genomes
Target Site Duplication
Size (bp)
Orthologs
Curated drosophilid orthologs
Comments

Other Information
Etymology

External Crossreferences
Sequence Crossreferences
	DDBJ/EMBL/GenBank
Other Crossreferences

Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	Jockey2 (Kapitonov and Jurka, 2003, Brennecke et al., 2007) jockey2 (FlyBase, 1992-, Pane et al., 2011, Smith et al., 2007, Kawamura et al., 2008, Bergman and Bensasson, 2007, Chen and Li, 2007) JOCKEY2 (Gunawardane et al., 2007)
Name Synonym	jockey2
Secondary FlyBase IDs
	FBgn0063425 FBtp0017070
References ( 13 )
Research paper	Pane et al., 2011, EMBO J. 30(22): 4601--4615 The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline. [FBrf0217070] Kawamura et al., 2008, Nature 453(7196): 793--797 Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells. [FBrf0205455] Bergman and Bensasson, 2007, Proc. Natl. Acad. Sci. U.S.A. 104(27): 11340--11345 Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster. [FBrf0202304] Brennecke et al., 2007, Cell 128(6): 1089--1103 Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. [FBrf0200494] Chen and Li, 2007, BMC Evol. Biol. 7: 46 Transposable elements are enriched within or in close proximity to xenobiotic-metabolizing cytochrome P450 genes. [FBrf0201767] Smith et al., 2007, Science 316(5831): 1586--1591 The Release 5.1 annotation of Drosophila melanogaster heterochromatin. [FBrf0216199] Kapitonov and Jurka, 2003, Proc. Natl. Acad. Sci. U.S.A. 100(11): 6569--6574 Molecular paleontology of transposable elements in the Drosophila melanogaster genome. [FBrf0160656] Kaminker et al., 2002, Genome Biol. 3(12): RESEARCH0084 The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective. [FBrf0155828] Kapitonov and Jurka, 2002, Repbase Reps 2(3): 5 JOCKEY2, an ancient family of non-LTR retrotransposons from the Jockey clad. [FBrf0151611]
Supplementary material	Gunawardane et al., 2007, Supporting online material. Supporting online material. [FBrf0200143]
Personal communication to FlyBase	Ashburner, 2002.8.15, te updates. te updates. [FBrf0151627] Kapitonov and Jurka, 1997-, A reference collection of Drosophila repetitive sequences. (Computer file) A reference collection of Drosophila repetitive sequences. (Computer file) [FBrf0151607]
FlyBase analysis	FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]