Dmel\G5

General Information
Symbol	Dmel\G5	Species	D.melanogaster
Name	G5	FlyBase ID	FBte0001128
Feature type	natural transposable element
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Sequences & Components
Complete element (bp)	4856 (Kaminker et al., 2002)
Terminal repeat (bp)
Reference sequence	transposon_sequence_set.embl.txt.gz
Component genes
Sequence Accessions
	DDBJ/EMBL/GenBank AY725850
Sequence Ontology (SO)
Transposon type	non_LTR_retrotransposon (Kaminker et al., 2002, Kapitonov and Jurka, 1997-) transposable_element (Kaminker et al., 2002, Kapitonov and Jurka, 1997-)
Insertions & Copy Number
Copy number and comments	9 in euchromatin of Release 3 genome annotation, of which zero are full length. (Kaminker et al., 2002)
Search for	All insertions of this transposon Insertions in the sequenced genome Insertions in other genomes
Target Site Duplication
Size (bp)
Orthologs
Curated drosophilid orthologs
Comments

Other Information
Etymology

External Crossreferences
Sequence Crossreferences
	DDBJ/EMBL/GenBank AY725850
Other Crossreferences

Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	G5 (Pane et al., 2011, Kawamura et al., 2008, Deloger et al., 2009, Bergman and Bensasson, 2007, Li et al., 2009, Olivieri et al., 2012) G5_DM (Kapitonov and Jurka, 1997-)
Name Synonym	G5
Secondary FlyBase IDs
	FBgn0063504 FBtp0017039
References ( 13 )
Research paper	Olivieri et al., 2012, Mol. Cell 47(6): 954--969 The Cochaperone Shutdown Defines a Group of Biogenesis Factors Essential for All piRNA Populations in Drosophila. [FBrf0219572] Pane et al., 2011, EMBO J. 30(22): 4601--4615 The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline. [FBrf0217070] Marques et al., 2010, Nat. Struct. Mol. Biol. 17(1): 24--30 Loqs and R2D2 act sequentially in the siRNA pathway in Drosophila. [FBrf0209625] Deloger et al., 2009, Gene 439(1-2): 55--62 Identification of expressed transposable element insertions in the sequenced genome of Drosophila melanogaster. [FBrf0207990] Li et al., 2009, Cell 137(3): 509--521 Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies. [FBrf0208736] Kawamura et al., 2008, Nature 453(7196): 793--797 Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells. [FBrf0205455] Bergman and Bensasson, 2007, Proc. Natl. Acad. Sci. U.S.A. 104(27): 11340--11345 Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster. [FBrf0202304] Kapitonov and Jurka, 2003, Proc. Natl. Acad. Sci. U.S.A. 100(11): 6569--6574 Molecular paleontology of transposable elements in the Drosophila melanogaster genome. [FBrf0160656] Kaminker et al., 2002, Genome Biol. 3(12): RESEARCH0084 The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective. [FBrf0155828] Kapitonov and Jurka, 2002, Repbase Reps 2(3): 2 G5_DM, an ancient family of non-LTR retrotransposons from the Jockey clad. [FBrf0151608]
Personal communication to FlyBase	Ashburner, 2002.8.15, te updates. te updates. [FBrf0151627] Kapitonov and Jurka, 1997-, A reference collection of Drosophila repetitive sequences. (Computer file) A reference collection of Drosophila repetitive sequences. (Computer file) [FBrf0151607]
FlyBase analysis	FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]