FlyBase Natural Transposon Report: Dmel\X-element

General Information

Symbol

X-element

Species

D. melanogaster

Feature type

natural_transposable_element

FlyBase ID

FBte0001160

Sequences and Components

Complete element (bp)

4740

(Kaminker et al., 2002, Tudor et al., 2001)

Terminal repeat (bp)

Reference sequence

transposon_sequence_set.fa.gz transposon_sequence_set.gff.gz

Component genes

X-element\ORF2

X-element\ORF1

Sequence Accessions

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

Sequence Ontology (SO)

Transposon type

non_LTR_retrotransposon

(Lipatov et al., 2005, Kaminker et al., 2002, Tudor et al., 2001)

transposable_element

(Kaminker et al., 2002)

Insertions and Copy Number

Copy number and comments

~30

(Tudor et al., 2001)

25 in euchromatin of Release 3 genome annotation, of which 6 are full length.

(Kaminker et al., 2002)

Search for

Target Site Duplication

Size (bp)

Orthologs

Curated drosophilid orthologs

Comments

The CG2042 gene has been deleted as the ORF corresponds to the X-element X{}4031.

(FlyBase Genome Annotators, 2007)

Other Information

Etymology

External Crossreferences and Linkouts ( 8 )

Crossreferences

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

Synonyms and Secondary IDs (13)

Reported As

Symbol Synonym

CG17439

(Misra, 2001.8.16)

CG18256

(Misra, 2001.7.30)

CG18303

(Misra, 2001.7.30)

CG18352

(Misra, 2001.7.30)

CG18665

(Misra, 2001.7.31)

CG2042

(FlyBase Genome Annotators, 2007, Misra, 2001.8.16)

HDC08443

(Huang et al., 2021, Basquin et al., 2014, Huang et al., 2014, Deloger et al., 2009, Hamilton et al., 2009, Li et al., 2009)

X element

(O'Hare et al., 2002, Misra, 2001.8.16, Misra, 2001.8.16)

X-978

(Schuster et al., 2013)

X-ELEMENT

(Rigal et al., 2022)

X-element

(Wierzbicki et al., 2023, Rech et al., 2019, Kofler et al., 2015, Senti et al., 2015, Kofler et al., 2012, Pane et al., 2011, Petrov et al., 2011, González et al., 2010, González et al., 2008, Kawamura et al., 2008, Brennecke et al., 2007, Gunawardane et al., 2007, Bergman et al., 2006, Saito et al., 2006, Lipatov et al., 2005)

x-element

(Sun et al., 2003)

Secondary FlyBase IDs

FBgn0040969
FBgn0037210
FBgn0036130
FBgn0031212
FBgn0030380
FBgn0042231
FBtp0011469
FBgn0032944

References (51)

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